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IPPS
2006
IEEE
14 years 2 months ago
MT-ClustalW: multithreading multiple sequence alignment
ClustalW is the most widely used tool for aligning multiple protein or nucleotide sequences. The alignment is achieved via three stages: pairwise alignment, guide tree generation ...
K. Chaichoompu, Surin Kittitornkun, Sissades Tongs...
IPPS
2006
IEEE
14 years 2 months ago
Cooperative load balancing for a network of heterogeneous computers
In this paper we present a game theoretic approach to solve the static load balancing problem in a distributed system which consists of heterogeneous computers connected by a sing...
Satish Penmatsa, Anthony T. Chronopoulos
IPPS
2006
IEEE
14 years 2 months ago
Load balancing in the presence of random node failure and recovery
In many distributed computing systems that are prone to either induced or spontaneous node failures, the number of available computing resources is dynamically changing in a rando...
Sagar Dhakal, Majeed M. Hayat, Jorge E. Pezoa, Cha...
IPPS
2006
IEEE
14 years 2 months ago
Tree-based overlay networks for scalable applications
The increasing availability of high-performance computing systems with thousands, tens of thousands, and even hundreds of thousands of computational nodes is driving the demand fo...
Dorian C. Arnold, G. D. Pack, Barton P. Miller
IPPS
2006
IEEE
14 years 2 months ago
A method to improve structural modeling based on conserved domain clusters
—Homology modeling requires an accurate alignment between a query sequence and its homologs with known three-dimensional (3D) information. Current structural modeling techniques ...
Fa Zhang, Lin Xu, Bo Yuan
IPPS
2006
IEEE
14 years 2 months ago
An advanced performance analysis of self-stabilizing protocols: stabilization time with transient faults during convergence
A self-stabilizing protocol is a brilliant framework for fault tolerance. It can recover from any number and any type of transient faults and eventually converge to its intended b...
Yoshihiro Nakaminami, Hirotsugu Kakugawa, Toshimit...
IPPS
2006
IEEE
14 years 2 months ago
FPGA implementation of a license plate recognition SoC using automatically generated streaming accelerators
Modern FPGA platforms provide the hardware and software infrastructure for building a bus-based System on Chip (SoC) that meet the applications requirements. The designer can cust...
Nikolaos Bellas, Sek M. Chai, Malcolm Dwyer, Dan L...
IPPS
2006
IEEE
14 years 2 months ago
Achieving strong scaling with NAMD on Blue Gene/L
NAMD is a scalable molecular dynamics application, which has demonstrated its performance on several parallel computer architectures. Strong scaling is necessary for molecular dyn...
Sameer Kumar, Chao Huang, George Almási, La...
IPPS
2006
IEEE
14 years 2 months ago
A decomposition approach for optimizing the performance of MPI libraries
MPI provides a portable message passing interface for many parallel execution platforms but may lead to inefficiencies for some platforms and applications. In this article we sho...
O. Hartmann, Matthias Kühnemann, Thomas Raube...