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    ALMOB
    2006
    113views more  ALMOB 2006»
    Inverse bifurcation analysis: application to simple gene systems
    14 years 23 days ago
    Inverse bifurcation analysis: application to simple gene systems
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    Background: Bifurcation analysis has proven to be a powerful method for understanding the qualitative behavior of gene regulatory networks. In addition to the more traditional for...
    James Lu, Heinz W. Engl, Peter Schuster
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    ALMOB
    2006
    106views more  ALMOB 2006»
    Multiple sequence alignment with user-defined anchor points
    14 years 23 days ago
    Multiple sequence alignment with user-defined anchor points
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    Background: Automated software tools for multiple alignment often fail to produce biologically meaningful results. In such situations, expert knowledge can help to improve the qua...
    Burkhard Morgenstern, Sonja J. Prohaska, Dirk P&ou...
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    ALMOB
    2006
    62views more  ALMOB 2006»
    EXMOTIF: efficient structured motif extraction
    14 years 23 days ago
    EXMOTIF: efficient structured motif extraction
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    Yongqiang Zhang, Mohammed J. Zaki
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    ALMOB
    2006
    56views more  ALMOB 2006»
    SMOTIF: efficient structured pattern and profile motif search
    14 years 23 days ago
    SMOTIF: efficient structured pattern and profile motif search
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    Yongqiang Zhang, Mohammed J. Zaki
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    ALMOB
    2006
    80views more  ALMOB 2006»
    Pattern statistics on Markov chains and sensitivity to parameter estimation
    14 years 23 days ago
    Pattern statistics on Markov chains and sensitivity to parameter estimation
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    Background: In order to compute pattern statistics in computational biology a Markov model is commonly used to take into account the sequence composition. Usually its parameter mu...
    Grégory Nuel
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    ALMOB
    2006
    110views more  ALMOB 2006»
    New journal: Algorithms for Molecular Biology
    14 years 23 days ago
    New journal: Algorithms for Molecular Biology
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    This editorial announces Algorithms for Molecular Biology, a new online open access journal published by BioMed Central. By launching the first open access journal on algorithmic ...
    Burkhard Morgenstern, Peter F. Stadler
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    ALMOB
    2006
    81views more  ALMOB 2006»
    Fast calculation of the quartet distance between trees of arbitrary degrees
    14 years 23 days ago
    Fast calculation of the quartet distance between trees of arbitrary degrees
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    Chris Christiansen, Thomas Mailund, Christian N. S...
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    ALMOB
    2006
    135views more  ALMOB 2006»
    P-value based visualization of codon usage data
    14 years 23 days ago
    P-value based visualization of codon usage data
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    Two important and not yet solved problems in bacterial genome research are the identification of horizontally transferred genes and the prediction of gene expression levels. Both ...
    Peter Meinicke, Thomas Brodag, Wolfgang Florian Fr...
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    ALMOB
    2006
    86views more  ALMOB 2006»
    Analysis of computational approaches for motif discovery
    14 years 23 days ago
    Analysis of computational approaches for motif discovery
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    Recently, we performed an assessment of 13 popular computational tools for discovery of transcription factor binding sites (M. Tompa, N. Li, et al., "Assessing Computational ...
    Nan Li, Martin Tompa
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    ALMOB
    2006
    155views more  ALMOB 2006»
    Refining motifs by improving information content scores using neighborhood profile search
    14 years 23 days ago
    Refining motifs by improving information content scores using neighborhood profile search
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    The main goal of the motif finding problem is to detect novel, over-represented unknown signals in a set of sequences (e.g. transcription factor binding sites in a genome). The mo...
    Chandan K. Reddy, Yao-Chung Weng, Hsiao-Dong Chian...
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