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    ALMOB
    2006
    89views more  ALMOB 2006»
    On the maximal cliques in c-max-tolerance graphs and their application in clustering molecular sequences
    13 years 11 months ago
    On the maximal cliques in c-max-tolerance graphs and their application in clustering molecular sequences
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    Given a set S of n locally aligned sequences, it is a needed prerequisite to partition it into groups of very similar sequences to facilitate subsequent computations, such as the ...
    Katharina Anna Lehmann, Michael Kaufmann, Stephan ...
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    ALMOB
    2006
    110views more  ALMOB 2006»
    Computing distribution of scale independent motifs in biological sequences
    13 years 11 months ago
    Computing distribution of scale independent motifs in biological sequences
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    The use of Chaos Game Representation (CGR) or its generalization, Universal Sequence Maps (USM), to describe the distribution of biological sequences has been found objectionable ...
    Jonas S. Almeida, Susana Vinga
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    ALMOB
    2006
    138views more  ALMOB 2006»
    An enhanced RNA alignment benchmark for sequence alignment programs
    13 years 11 months ago
    An enhanced RNA alignment benchmark for sequence alignment programs
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    Background: The performance of alignment programs is traditionally tested on sets of protein sequences, of which a reference alignment is known. Conclusions drawn from such protei...
    Andreas Wilm, Indra Mainz, Gerhard Steger
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    ALMOB
    2006
    58views more  ALMOB 2006»
    Reconstructing protein structure from solvent exposure using tabu search
    13 years 11 months ago
    Reconstructing protein structure from solvent exposure using tabu search
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    Martin Paluszewski, Thomas Hamelryck, Pawel Winter
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    ALMOB
    2006
    86views more  ALMOB 2006»
    Finding the region of pseudo-periodic tandem repeats in biological sequences
    13 years 11 months ago
    Finding the region of pseudo-periodic tandem repeats in biological sequences
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    Xiaowen Liu, Lusheng Wang
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    ALMOB
    2006
    102views more  ALMOB 2006»
    Mining, compressing and classifying with extensible motifs
    13 years 11 months ago
    Mining, compressing and classifying with extensible motifs
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    Background: Motif patterns of maximal saturation emerged originally in contexts of pattern discovery in biomolecular sequences and have recently proven a valuable notion also in t...
    Alberto Apostolico, Matteo Comin, Laxmi Parida
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    ALMOB
    2006
    138views more  ALMOB 2006»
    A combinatorial optimization approach for diverse motif finding applications
    13 years 11 months ago
    A combinatorial optimization approach for diverse motif finding applications
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    Background: Discovering approximately repeated patterns, or motifs, in biological sequences is an important and widely-studied problem in computational molecular biology. Most fre...
    Elena Zaslavsky, Mona Singh
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    ALMOB
    2006
    40views more  ALMOB 2006»
    Probability-based model of protein-protein interactions on biological timescales
    13 years 11 months ago
    Probability-based model of protein-protein interactions on biological timescales
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    Alexander L. Tournier, Paul W. Fitzjohn, Paul A. B...
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    ALMOB
    2006
    97views more  ALMOB 2006»
    The approximability of the String Barcoding problem
    13 years 11 months ago
    The approximability of the String Barcoding problem
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    The String Barcoding (SBC) problem, introduced by Rash and Gusfield (RECOMB, 2002), consists in finding a minimum set of substrings that can be used to distinguish between all mem...
    Giuseppe Lancia, Romeo Rizzi
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    ALMOB
    2006
    61views more  ALMOB 2006»
    Automatic layout and visualization of biclusters
    13 years 11 months ago
    Automatic layout and visualization of biclusters
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    Gregory A. Grothaus, Adeel Mufti, T. M. Murali
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