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BMCBI
2005
113views more  BMCBI 2005»
13 years 11 months ago
Pathway level analysis of gene expression using singular value decomposition
Background: A promising direction in the analysis of gene expression focuses on the changes in expression of specific predefined sets of genes that are known in advance to be rela...
John K. Tomfohr, Jun Lu, Thomas B. Kepler
BMCBI
2005
180views more  BMCBI 2005»
13 years 11 months ago
arrayCGHbase: an analysis platform for comparative genomic hybridization microarrays
Background: The availability of the human genome sequence as well as the large number of physically accessible oligonucleotides, cDNA, and BAC clones across the entire genome has ...
Björn Menten, Filip Pattyn, Katleen De Preter...
BMCBI
2005
152views more  BMCBI 2005»
13 years 11 months ago
GeneKeyDB: A lightweight, gene-centric, relational database to support data mining environments
Background: The analysis of biological data is greatly enhanced by existing or emerging databases. Most existing databases, with few exceptions are not designed to easily support ...
S. A. Kirov, X. Peng, E. Baker, D. Schmoyer, B. Zh...
BMCBI
2005
101views more  BMCBI 2005»
13 years 11 months ago
MASQOT: a method for cDNA microarray spot quality control
Background: cDNA microarray technology has emerged as a major player in the parallel detection of biomolecules, but still suffers from fundamental technical problems. Identifying ...
Max Bylesjö, Daniel Eriksson, Andreas Sjö...
BMCBI
2005
137views more  BMCBI 2005»
13 years 11 months ago
ArrayQuest: a web resource for the analysis of DNA microarray data
Background: Numerous microarray analysis programs have been created through the efforts of Open Source software development projects. Providing browser-based interfaces that allow...
Gary L. Argraves, Saurin D. Jani, Jeremy L. Barth,...
IVS
2007
120views more  IVS 2007»
13 years 11 months ago
Visual exploration and analysis of historic hotel visits
Understanding the spatial and temporal characteristics of individual and group behavior in social networks is a critical component of visual tools for intelligence analysis, emerg...
Chris Weaver, David Fyfe, Anthony Robinson, Deryck...
SP
2008
IEEE
140views Security Privacy» more  SP 2008»
13 years 11 months ago
Knowledge support and automation for performance analysis with PerfExplorer 2.0
The integration of scalable performance analysis in parallel development tools is difficult. The potential size of data sets and the need to compare results from multiple experime...
Kevin A. Huck, Allen D. Malony, Sameer Shende, Ala...
SIGMETRICS
2008
ACM
175views Hardware» more  SIGMETRICS 2008»
13 years 11 months ago
DARC: dynamic analysis of root causes of latency distributions
OSprof is a versatile, portable, and efficient profiling methodology based on the analysis of latency distributions. Although OSprof has offers several unique benefits and has bee...
Avishay Traeger, Ivan Deras, Erez Zadok
RTS
2006
129views more  RTS 2006»
13 years 11 months ago
Modeling out-of-order processors for WCET analysis
Estimating the Worst Case Execution Time (WCET) of a program on a given processor is important for the schedulability analysis of real-time systems. WCET analysis techniques typic...
Xianfeng Li, Abhik Roychoudhury, Tulika Mitra
IEEEMM
2007
146views more  IEEEMM 2007»
13 years 11 months ago
Learning Microarray Gene Expression Data by Hybrid Discriminant Analysis
— Microarray technology offers a high throughput means to study expression networks and gene regulatory networks in cells. The intrinsic nature of high dimensionality and small s...
Yijuan Lu, Qi Tian, Maribel Sanchez, Jennifer L. N...