Sciweavers

SC
2005
ACM
14 years 2 months ago
SPICE: Simulated Pore Interactive Computing Environment
— SPICE aims to understand the vital process of translocation of biomolecules across protein pores by computing the free energy profile of the translocating biomolecule along th...
Shantenu Jha, Peter V. Coveney, Matt J. Harvey
SC
2005
ACM
14 years 2 months ago
Alternative Software Stacks for OGSA-based Grids
: The Open Grid Services Architecture (OGSA) has been a major step forward for Grid Computing, but its de facto reliance on the Web Services Resource Framework (WSRF) and WSNotific...
Marty A. Humphrey, Glenn S. Wasson, Yuliyan Kiryak...
SC
2005
ACM
14 years 2 months ago
PerfExplorer: A Performance Data Mining Framework For Large-Scale Parallel Computing
Parallel applications running on high-end computer systems manifest a complexity of performance phenomena. Tools to observe parallel performance attempt to capture these phenomena...
Kevin A. Huck, Allen D. Malony
SC
2005
ACM
14 years 2 months ago
A Power-Aware Run-Time System for High-Performance Computing
For decades, the high-performance computing (HPC) community has focused on performance, where performance is defined as speed. To achieve better performance per compute node, mic...
Chung-Hsing Hsu, Wu-chun Feng
SC
2005
ACM
14 years 2 months ago
ClawHMMER: A Streaming HMMer-Search Implementation
The proliferation of biological sequence data has motivated the need for an extremely fast probabilistic sequence search. One method for performing this search involves evaluating...
Daniel Reiter Horn, Mike Houston, Pat Hanrahan
SC
2005
ACM
14 years 2 months ago
Bridging the Macro and Micro: A Computing Intensive Earthquake Study Using Discovery Net
We present the development and use of a novel distributed geohazard modeling environment for the analysis and interpretation of large scale earthquake data sets. Our work demonstr...
Yike Guo, Jian Guo Liu, Moustafa Ghanem, Kyran Mis...
SC
2005
ACM
14 years 2 months ago
Parallel Programmer Productivity: A Case Study of Novice Parallel Programmers
In developing High-Performance Computing (HPC) software, time to solution is an important metric. This metric is comprised of two main components: the human effort required develo...
Lorin Hochstein, Jeffrey Carver, Forrest Shull, Si...
SC
2005
ACM
14 years 2 months ago
A Benchmark Suite for SOAP-based Communication in Grid Web Services
Michael R. Head, Madhusudhan Govindaraju, Aleksand...
SC
2005
ACM
14 years 2 months ago
Transparent, Incremental Checkpointing at Kernel Level: a Foundation for Fault Tolerance for Parallel Computers
We describe the software architecture, technical features, and performance of TICK (Transparent Incremental Checkpointer at Kernel level), a system-level checkpointer implemented ...
Roberto Gioiosa, José Carlos Sancho, Song J...