ISDA
2009
IEEE
14 years 7 months ago
2009
IEEE
—Protein binding sites are often represented by means of graphs capturing their most important geometrical and physicochemical properties. Searching for structural similarities a...
RECOMB
2001
Springer
15 years 23 days ago
2001
Springer
The recent growth in genomic data and measurements of genome-wide expression patterns allows us to apply computational tools to examine gene regulation by transcription factors. I...
RECOMB
2001
Springer
15 years 23 days ago
2001
Springer
Phylogenetic footprinting is a comparative genomics approach for predicting transcription factor binding sites, where a set of orthologous regulatory regions are compared and short...
RECOMB
2003
Springer
15 years 23 days ago
2003
Springer
The availability of whole genome sequences and high-throughput genomic assays opens the door for in silico analysis of transcription regulation. This includes methods for discover...
RECOMB
2004
Springer
15 years 23 days ago
2004
Springer
Transcriptional regulation is mediated by the coordinated binding of transcription factors to the upstream regions of genes. In higher eukaryotes, the binding sites of cooperating...
RECOMB
2005
Springer
15 years 23 days ago
2005
Springer
We present a novel computational method, MultiBind, for recognition of binding patterns common to a set of protein structures. It is the first method which performs a multiple alig...
RECOMB
2005
Springer
15 years 23 days ago
2005
Springer
Abstract. Current approaches for identification and detection of transcription factor binding sites rely on an extensive set of known target genes. Here we describe a novel structu...