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    BIOCOMP
    2006
    105views Bioinformatics» more  BIOCOMP 2006»
    Membrane Remodeling and Diffusion of Cytochrome C from a Geometrically Idealized Mitochondrial Crista
    14 years 28 days ago
    Membrane Remodeling and Diffusion of Cytochrome C from a Geometrically Idealized Mitochondrial Crista
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    In healthy eukaryotic cells, mitochondria have an outer membrane that surrounds a complex inner membrane structure [7,8]. Cytochrome c is found in the space between the two membra...
    John Manor, Peter Salamon, James Nulton, Joseph Ma...
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    BIOCOMP
    2006
    106views Bioinformatics» more  BIOCOMP 2006»
    Reverse Engineering Approach in Molecular Evolution: Simulation and Case Study with Enzyme Proteins
    14 years 28 days ago
    Reverse Engineering Approach in Molecular Evolution: Simulation and Case Study with Enzyme Proteins
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    - We developed a method of reverse engineering to compare the behaviour the enzyme proteins with the existing standard concepts. Our work is based on the strong assumption from the...
    Sukanya Manna, Cheng-Yuan Liou
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    BIOCOMP
    2006
    104views Bioinformatics» more  BIOCOMP 2006»
    The Generalized Topological Overlap Matrix for Detecting Modules in Gene Networks
    14 years 28 days ago
    The Generalized Topological Overlap Matrix for Detecting Modules in Gene Networks
    Download  www.genetics.ucla.edu
    Systems biologic studies of gene and protein interaction networks have found that these networks are comprised of `modules' (groups of tightly interconnected nodes). Module i...
    Andy M. Yip, Steve Horvath
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    BIOCOMP
    2006
    131views Bioinformatics» more  BIOCOMP 2006»
    PAC: Progressive Alignment with Consensus Sequences
    14 years 28 days ago
    PAC: Progressive Alignment with Consensus Sequences
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    Computation of multiple sequence alignments is one of the major open problems in computational molecular biology. The purpose of this study was to provide a new method, PAC (Progre...
    Ke Liu, Mansur H. Samadzadeh
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    BIOCOMP
    2006
    132views Bioinformatics» more  BIOCOMP 2006»
    Parameterized Computation of LCS for Two Sequences
    14 years 28 days ago
    Parameterized Computation of LCS for Two Sequences
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    - The problem of finding the longest common subsequence is a well-known optimization problem because of its applications, especially in bioinformatics. In this paper, by applying t...
    Yuan Lin, Jeff Jenness, Xiuzhen Huang
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    BIOCOMP
    2006
    102views Bioinformatics» more  BIOCOMP 2006»
    The Multi-Node Topological Overlap Measure For Gene Neighborhood Analysis
    14 years 28 days ago
    The Multi-Node Topological Overlap Measure For Gene Neighborhood Analysis
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    Defining the neighborhood of an initial set of nodes is an important task in network analysis. For example, we show that the neighborhood of an initial set of brain cancer related ...
    Ai Li, Steve Horvath
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    BIOCOMP
    2006
    95views Bioinformatics» more  BIOCOMP 2006»
    Using Neural Nets to Estimate Evolutionary Parameters
    14 years 28 days ago
    Using Neural Nets to Estimate Evolutionary Parameters
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    - The rapid growth in the amount of molecular genetic data being collected will, in many cases, require the development of new analytic methods for the analysis of that data. In th...
    Chi-Chiang Lee, Paul Marjoram
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    BIOCOMP
    2006
    95views Bioinformatics» more  BIOCOMP 2006»
    Reduced-rank Multivariate Model for Time-course Microarray Data
    14 years 28 days ago
    Reduced-rank Multivariate Model for Time-course Microarray Data
    Download  www.infornomics.utoronto.ca
    Rafal Kustra
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    BIOCOMP
    2006
    107views Bioinformatics» more  BIOCOMP 2006»
    A Multi-strategy Approach to Protein Structural Alphabet Design
    14 years 28 days ago
    A Multi-strategy Approach to Protein Structural Alphabet Design
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    - The search for structural similarity among proteins can provide valuable insights into their functional mechanisms and their functional relationships. Though the protein 1D seque...
    Shih-Yen Ku, Yuh-Jyh Hu
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    BIOCOMP
    2006
    67views Bioinformatics» more  BIOCOMP 2006»
    A New Algorithm to Predict the Active Sites Using Amino Acid Vectors and Biochemical features of Surface Patches
    14 years 28 days ago
    A New Algorithm to Predict the Active Sites Using Amino Acid Vectors and Biochemical features of Surface Patches
    Download  ww1.ucmss.com
    : It is a very active research field to predict protein functions and active sites by protein surface patches. It is especially challengeable to predict the active sites by structu...
    Sunshin Kim, Chung Rhee, Jungdo Choi, Yong Je Chun...
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