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CSB
2005
IEEE
131views Bioinformatics» more  CSB 2005»
14 years 1 months ago
Current Challenges in Bioimage Database Design
Information technology research has played a significant role in the high-throughput acquisition and analysis of biological information. The tremendous amount of information gath...
Ambuj K. Singh, Arnab Bhattacharya, Vebjorn Ljosa
CSB
2005
IEEE
131views Bioinformatics» more  CSB 2005»
14 years 1 months ago
Phylogenetic Postprocessing
Nicholas D. Pattengale, Bernard M. E. Moret
CSB
2005
IEEE
133views Bioinformatics» more  CSB 2005»
14 years 1 months ago
Creating a Protein Ontology Resource
Protein Data Integration approaches at the moment considers data sources as data repositories, but not as applications; which in turn may embody complex interactions with other da...
Amandeep S. Sidhu, Tharam S. Dillon, Elizabeth Cha...
CSB
2005
IEEE
14 years 1 months ago
Two-way clustering of gene expression profiles by sparse matrix factorization
Alberto D. Pascual-Montano, Francisco Tirado, Pedr...
CSB
2005
IEEE
167views Bioinformatics» more  CSB 2005»
14 years 1 months ago
SinicView: An Interactive Visualization Tool for Comparison of Multiple Sequence Alignment Results
In the initial stage of sequence analysis, a biologist is first faced with the questions about how to choose the best tool to align sequences of interest and how to analyze and v...
Arthur Chun-Chieh Shih, D. T. Lee, Laurent Lin, Ch...
CSB
2005
IEEE
126views Bioinformatics» more  CSB 2005»
14 years 1 months ago
Discover True Association Rates in Multi-protein Complex Proteomics Data Sets
Experimental processes to collect and process proteomics data are increasingly complex, while the computational methods to assess the quality and significance of these data remain...
Changyu Shen, Lang Li, Jake Yue Chen
CSB
2005
IEEE
137views Bioinformatics» more  CSB 2005»
14 years 1 months ago
A Learned Comparative Expression Measure for Affymetrix GeneChip DNA Microarrays
Perhaps the most common question that a microarray study can ask is, “Between two given biological conditions, which genes exhibit changed expression levels?” Existing methods...
Will Sheffler, Eli Upfal, John Sedivy, William Sta...
CSB
2005
IEEE
125views Bioinformatics» more  CSB 2005»
14 years 1 months ago
Islands of Tractability for Parsimony Haplotyping
We study the parsimony approach to haplotype inference, which calls for finding a set of haplotypes of minimum cardinality that explains an input set of genotypes. We prove that ...
Roded Sharan, Bjarni V. Halldórsson, Sorin ...
CSB
2005
IEEE
129views Bioinformatics» more  CSB 2005»
14 years 1 months ago
ssahaSNP A Polymorphism Detection Tool on a Whole Genome Scale
We present a software package which can detect homozygous SNPs and indels on a eukaryotic genome scale from millions of shotgun reads. Matching seeds of a few kmer words are found...
Zemin Ning, Mario Cáccamo, James C. Mulliki...
CSB
2005
IEEE
129views Bioinformatics» more  CSB 2005»
14 years 1 months ago
A Pivoting Algorithm for Metabolic Networks in the Presence of Thermodynamic Constraints
A linear programming algorithm is presented to constructively compute thermodynamically feasible fluxes and change in chemical potentials of reactions for a metabolic network. It...
R. Nigam, S. Liang