Biological Sequence Analysis

Wepresent the prototype of a software system, cMledGeneQuiz,for large-scale biological sequence analysis. The system was designed to meet the needs that arise in computational seq...

Michael Scharf, Reinhard Schneider, Georg Casari, ...

claim paper

Read More »

31

click to vote

AINA
2006
IEEE

144views Computer Networks» more AINA 2006»

Accelerating the HMMER Sequence Analysis Suite Using Conventional Processors

14 years 5 months ago

Download www.mpihmmer.org

Due to the ever-increasing size of sequence databases it has become clear that faster techniques must be employed to effectively perform biological sequence analysis in a reasonab...

John Paul Walters, Bashar Qudah, Vipin Chaudhary

claim paper

Read More »

29

click to vote

KDD
2001
ACM

149views Data Mining» more KDD 2001»

Maximum entropy methods for biological sequence modeling

14 years 12 months ago

Download www.cis.upenn.edu

Many of the same modeling methods used in natural languages, speci cally Markov models and HMM's, have also been applied to biological sequence analysis. In recent years, nat...

Eugen C. Buehler, Lyle H. Ungar

claim paper

Read More »

85

click to vote

ICLP
2009
Springer

100views Automated Reasoning» more ICLP 2009»

Logic-Statistic Models with Constraints for Biological Sequence Analysis

15 years 6 days ago