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    BIOINFORMATICS
    2011
    210views Artificial Intelligence» more  BIOINFORMATICS 2011»
    Construction of co-complex score matrix for protein complex prediction from AP-MS data
    12 years 10 months ago
    Construction of co-complex score matrix for protein complex prediction from AP-MS data
    Download  www.ntu.edu.sg
    Zhipeng Xie, Chee Keong Kwoh, Xiaoli Li, Min Wu
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    BIOINFORMATICS
    2011
    161views Artificial Intelligence» more  BIOINFORMATICS 2011»
    RuleBender: a visual interface for rule-based modeling
    12 years 10 months ago
    RuleBender: a visual interface for rule-based modeling
    Download  dl.dropbox.com
    Wen Xu, Adam M. Smith, James R. Faeder, G. Elisabe...
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    BIOINFORMATICS
    2011
    355views Artificial Intelligence» more  BIOINFORMATICS 2011»
    ProDy: Protein Dynamics Inferred from Theory and Experiments
    12 years 10 months ago
    ProDy: Protein Dynamics Inferred from Theory and Experiments
    Download  www.ccbb.pitt.edu
    Summary: We developed a Python package, ProDy, for structurebased analysis of protein dynamics. ProDy allows for quantitative characterization of structural variations in heteroge...
    Ahmet Bakan, Lidio M. Meireles, Ivet Bahar
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    BIOINFORMATICS
    2011
    212views Artificial Intelligence» more  BIOINFORMATICS 2011»
    RINQ: Reference-based Indexing for Network Queries
    12 years 10 months ago
    RINQ: Reference-based Indexing for Network Queries
    Download  www.cise.ufl.edu
    We consider the problem of similarity queries in biological network databases. Given a database of networks, similarity query returns all the database networks whose similarity (i...
    Günhan Gülsoy, Tamer Kahveci
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    BIOINFORMATICS
    2011
    157views Artificial Intelligence» more  BIOINFORMATICS 2011»
    libfbi: a C++ implementation for fast box intersection and application to sparse mass spectrometry data
    12 years 10 months ago
    libfbi: a C++ implementation for fast box intersection and application to sparse mass spectrometry data
    Download  linuxco.de
    Abstract. This document is a preprint of the following publication: Bioinformatics (2011) 27(8): 1166-1167. Algorithms for sparse data require fast search and subset selection capa...
    Marc Kirchner, Buote Xu, Hanno Steen, Judith A. J....
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    BIOINFORMATICS
    2011
    201views Artificial Intelligence» more  BIOINFORMATICS 2011»
    STOCHSIMGPU: parallel stochastic simulation for the Systems Biology Toolbox 2 for MATLAB
    12 years 10 months ago
    STOCHSIMGPU: parallel stochastic simulation for the Systems Biology Toolbox 2 for MATLAB
    Download  people.maths.ox.ac.uk
    Guido Klingbeil, Radek Erban, Mike Giles, Philip K...
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    BIOINFORMATICS
    2011
    190views Artificial Intelligence» more  BIOINFORMATICS 2011»
    A Ruby API to query the Ensembl database for genomic features
    12 years 10 months ago
    A Ruby API to query the Ensembl database for genomic features
    Download  www.mendeley.com
    Francesco Strozzi, Jan Aerts
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    BIOINFORMATICS
    2011
    144views Artificial Intelligence» more  BIOINFORMATICS 2011»
    FIMO: scanning for occurrences of a given motif
    12 years 10 months ago
    FIMO: scanning for occurrences of a given motif
    Download  bioinformatics.oxfordjournals.org
    Charles E. Grant, Timothy L. Bailey, William Staff...
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    BIOINFORMATICS
    2011
    191views Artificial Intelligence» more  BIOINFORMATICS 2011»
    A pipeline for RNA-seq data processing and quality assessment
    12 years 10 months ago
    A pipeline for RNA-seq data processing and quality assessment
    Download  bioinformatics.oxfordjournals.org
    Angela Goncalves, Andrew Tikhonov, Alvis Brazma, M...
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    BIOINFORMATICS
    2011
    197views Artificial Intelligence» more  BIOINFORMATICS 2011»
    BayesPeak - an R package for analysing ChIP-seq data
    12 years 10 months ago
    BayesPeak - an R package for analysing ChIP-seq data
    Download  www.cmb.usc.edu
    Jonathan M. Cairns, Christiana Spyrou, Rory Stark,...
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