We present a new indexing method for the approximate string matching problem. The method is based on a su x tree combined with a partitioning of the pattern. We analyze the resulti...
This paper examines some of the rich structure of the syntenic distance model of evolutionary distance, introduced by Ferretti et al. (1996). The syntenic distance between two gen...
We focus on the combinatorial analysis of physical mapping with repeated probes. We present computational complexity results, and we describe and analyze an algorithmic strategy. W...
In sequencing by hybridization (SBH), one has to reconstruct a sequence from its l-long substrings. SBH was proposed as an alternative to gel-based DNA sequencing approaches, but ...
Amir Ben-Dor, Itsik Pe'er, Ron Shamir, Roded Shara...
Abstract. Hierarchical graphs are an important class of graphs for modelling many real applications in software and information visualization. In this paper, we shall investigate t...
Abstract: We propose a new approach for speeding up enumeration algorithms. The approach does not rely on data structures deeply, instead utilizes analysis of computation time. It ...
El-Yaniv et al. presented an optimal on-line algorithm for the unidirectional currency conversion problem based on the threat-based strategy. Later, al-Binali pointed out that this...