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BMCBI
2011
13 years 3 months ago
Assessing the functional coherence of modules found in multiple-evidence networks from Arabidopsis
Background: Combining multiple evidence-types from different information sources has the potential to reveal new relationships in biological systems. The integrated information ca...
Artem Lysenko, Michael Defoin-Platel, Keywan Hassa...
FUIN
2010
136views more  FUIN 2010»
13 years 8 months ago
Modeling Biology using Generic Reactive Animation
Abstract. Complex biological systems involve incorporated behaviors of numerous processes, mechanisms and objects. However, experimental analysis, by its nature, divides biological...
Yaki Setty, Irun R. Cohen, David Harel
TEC
2008
93views more  TEC 2008»
13 years 11 months ago
The Self-Organization of Interaction Networks for Nature-Inspired Optimization
Over the last decade, significant progress has been made in understanding complex biological systems, however there have been few attempts at incorporating this knowledge into natu...
James M. Whitacre, Ruhul A. Sarker, Q. Tuan Pham
BMCBI
2007
161views more  BMCBI 2007»
13 years 11 months ago
Efficient classification of complete parameter regions based on semidefinite programming
Background: Current approaches to parameter estimation are often inappropriate or inconvenient for the modelling of complex biological systems. For systems described by nonlinear ...
Lars Kuepfer, Uwe Sauer, Pablo A. Parrilo
GCB
2009
Springer
193views Biometrics» more  GCB 2009»
14 years 3 months ago
Integration and Visualisation of Multimodal Biological Data
: Understanding complex biological systems requires data from manifold biological levels. Often this data is analysed in some meaningful context, for example, by integrating it int...
Hendrik Rohn, Christian Klukas, Falk Schreiber
KES
2007
Springer
14 years 5 months ago
A Hybrid Symbolic-Statistical Approach to Modeling Metabolic Networks
Biological systems consist of many components and interactions between them. In Systems Biology the principal problem is modeling complex biological systems and reconstructing inte...
Marenglen Biba, Stefano Ferilli, Nicola Di Mauro, ...
ACSD
2008
IEEE
130views Hardware» more  ACSD 2008»
14 years 6 months ago
BAM: BioAmbient machine
In recent years it has become clear that techniques developed for concurrent programming are in fact very useful for the analysis of complex systems in biology. To some level of i...
Vinod A. Muganthan, Andrew Phillips, Maria Grazia ...