Sciweavers

RECOMB
2010
Springer
13 years 10 months ago
Novel Definition and Algorithm for Chaining Fragments with Proportional Overlaps
Chaining fragments is a crucial step in genome alignment. Existing chaining algorithms compute a maximum weighted chain with no overlaps allowed between adjacent fragments. In prac...
Raluca Uricaru, Alban Mancheron, Eric Rivals
RECOMB
2010
Springer
13 years 10 months ago
A New Genomic Evolutionary Model for Rearrangements, Duplications, and Losses That Applies across Eukaryotes and Prokaryotes
Background: Genomic rearrangements have been studied since the beginnings of modern genetics and models for such rearrangements have been the subject of many papers over the last ...
Yu Lin, Bernard M. E. Moret
RECOMB
2010
Springer
13 years 10 months ago
Ultra-Perfect Sorting Scenarios
Abstract. Perfection has been used as a criteria to select rearrangement scenarios since 2004. However, there is a fundamental bias towards extant species in the original definitio...
Aïda Ouangraoua, Anne Bergeron, Krister M. Sw...
RECOMB
2010
Springer
13 years 10 months ago
Listing All Parsimonious Reversal Sequences: New Algorithms and Perspectives
In comparative genomics studies, finding a minimum length sequences of reversals, so called sorting by reversals, has been the topic of a huge literature. Since there are many mini...
Ghada Badr, Krister M. Swenson, David Sankoff
RECOMB
2010
Springer
13 years 10 months ago
An Efficient Algorithm for Gene/Species Trees Parsimonious Reconciliation with Losses, Duplications and Transfers
(Motivation) Tree reconciliation is an approach that explains the discrepancies between two evolutionary trees by a number of events such as speciations, duplications, transfers an...
Jean-Philippe Doyon, Celine Scornavacca, K. Yu. Go...
BICOB
2010
Springer
13 years 10 months ago
Multiple Kernel Learning for Fold Recognition
Fold recognition is a key problem in computational biology that involves classifying protein sharing structural similarities into classes commonly known as "folds". Rece...
Huzefa Rangwala
ASM
2010
ASM
13 years 10 months ago
Specifying Self-configurable Component-Based Systems with FracToy
Alban Tiberghien, Philippe Merle, Lionel Seinturie...
ASM
2010
ASM
13 years 10 months ago
Formal Analysis in Model Management: Exploiting the Power of CZT
James R. Williams, Fiona A. C. Polack, Richard F. ...
TCSB
2010
13 years 11 months ago
Modelling Self-assembly in BlenX
Abstract. The process through which disordered components spontaneously arrange themselves into patterns is called self-assembly. Molecular self-assembly describes the process by w...
Roberto Larcher, Corrado Priami, Alessandro Romane...