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CPM
2009
Springer
183views Combinatorics» more  CPM 2009»
13 years 8 months ago
Permuted Longest-Common-Prefix Array
The longest-common-prefix (LCP) array is an adjunct to the suffix array that allows many string processing problems to be solved in optimal time and space. Its construction is a bo...
Juha Kärkkäinen, Giovanni Manzini, Simon...
CPM
2009
Springer
102views Combinatorics» more  CPM 2009»
14 years 44 min ago
Statistical Properties of Factor Oracles
Factor and suffix oracles have been introduced in [1] in order to provide an economic and efficient solution for storing all the factors and suffixes respectively of a given text. ...
Jérémie Bourdon, Irena Rusu
CPM
2009
Springer
131views Combinatorics» more  CPM 2009»
14 years 2 months ago
Linear Time Suffix Array Construction Using D-Critical Substrings
In this paper we present in detail a new efficient linear time and space suffix array construction algorithm(SACA), called the D-CriticalSubstring algorithm. The algorithm is built...
Ge Nong, Sen Zhang, Wai Hong Chan
CPM
2009
Springer
128views Combinatorics» more  CPM 2009»
14 years 2 months ago
Contracted Suffix Trees: A Simple and Dynamic Text Indexing Data Structure
Andrzej Ehrenfeucht, Ross M. McConnell, Sung-Whan ...
CPM
2009
Springer
90views Combinatorics» more  CPM 2009»
14 years 2 months ago
Sparse RNA Folding: Time and Space Efficient Algorithms
Rolf Backofen, Dekel Tsur, Shay Zakov, Michal Ziv-...
CPM
2009
Springer
207views Combinatorics» more  CPM 2009»
14 years 2 months ago
An Efficient Matching Algorithm for Encoded DNA Sequences and Binary Strings
We present a new efficient algorithm for exact matching in encoded DNA sequences and on binary strings. Our algorithm combines a multi-pattern version of the Bndm algorithm and a s...
Simone Faro, Thierry Lecroq
CPM
2009
Springer
93views Combinatorics» more  CPM 2009»
14 years 3 months ago
Fast Searching in Packed Strings
Philip Bille
CPM
2009
Springer
134views Combinatorics» more  CPM 2009»
14 years 5 months ago
Multiple Alignment of Biological Networks: A Flexible Approach
Yves-Pol Deniélou, Frédéric B...
CPM
2009
Springer
94views Combinatorics» more  CPM 2009»
14 years 5 months ago
Online Approximate Matching with Non-local Distances
Abstract. A black box method was recently given that solves the problem of online approximate matching for a class of problems whose distance functions can be classified as being ...
Raphaël Clifford, Benjamin Sach
CPM
2009
Springer
121views Combinatorics» more  CPM 2009»
14 years 5 months ago
LCS Approximation via Embedding into Local Non-repetitive Strings
A classical measure of similarity between strings is the length of the longest common subsequence(LCS) between the two given strings. The search for efficient algorithms for findi...
Gad M. Landau, Avivit Levy, Ilan Newman