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BMCBI
2006
78views more  BMCBI 2006»
13 years 7 months ago
An evaluation of human protein-protein interaction data in the public domain
Background: Protein-protein interaction (PPI) databases have become a major resource for investigating biological networks and pathways in cells. A number of publicly available re...
Suresh Mathivanan, Balamurugan Periaswamy, T. K. B...
BMCBI
2006
122views more  BMCBI 2006»
13 years 7 months ago
CoSMoS: Conserved Sequence Motif Search in the proteome
Background: With the ever-increasing number of gene sequences in the public databases, generating and analyzing multiple sequence alignments becomes increasingly time consuming. N...
Xiao I. Liu, Neeraj Korde, Ursula Jakob, Lars I. L...
BMCBI
2006
128views more  BMCBI 2006»
13 years 7 months ago
Construction of a nasopharyngeal carcinoma 2D/MS repository with Open Source XML Database - Xindice
Background: Many proteomics initiatives require integration of all information with uniformcriteria from collection of samples and data display to publication of experimental resu...
Feng Li, Maoyu Li, Zhiqiang Xiao, Pengfei Zhang, J...
BMCBI
2006
172views more  BMCBI 2006»
13 years 7 months ago
BioWarehouse: a bioinformatics database warehouse toolkit
Background: This article addresses the problem of interoperation of heterogeneous bioinformatics databases. Results: We introduce BioWarehouse, an open source toolkit for construc...
Thomas J. Lee, Yannick Pouliot, Valerie Wagner, Pr...
ESE
2008
93views Database» more  ESE 2008»
13 years 7 months ago
On the effectiveness of early life cycle defect prediction with Bayesian Nets
Norman E. Fenton, Martin Neil, William Marsh, Pete...
ESE
2008
88views Database» more  ESE 2008»
13 years 7 months ago
Cooperative method development
The development of methods tools and process improvements is best to be based on the understanding of the development practice to be supported. Qualitative research has been propo...
Yvonne Dittrich, Kari Rönkkö, Jeanette E...
ESE
2008
112views Database» more  ESE 2008»
13 years 7 months ago
"Cloning considered harmful" considered harmful: patterns of cloning in software
Literature on the topic of code cloning often asserts that duplicating code within a software system is a bad practice, that it causes harm to the system's design and should b...
Cory Kapser, Michael W. Godfrey
ESE
2008
68views Database» more  ESE 2008»
13 years 7 months ago
An industrial case study in reconstructing requirements views
Marco Lormans, Arie van Deursen, Hans-Gerhard Gro&...
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ESE
2008
107views Database» more  ESE 2008»
13 years 7 months ago
Realizing quality improvement through test driven development: results and experiences of four industrial teams
Test-driven development (TDD) is a software development practice that has been used sporadically for decades. With this practice, a software engineer cycles minute-by-minute betwee...
Nachiappan Nagappan, E. Michael Maximilien, Thirum...