EcoCyc is an organism-specific Pathway/Genome Database that describes the metabolic and signaltransduction pathways of Escherichia coli, its enzymes, and--a new addition--its tran...
Peter D. Karp, Monica Riley, Milton H. Saier Jr., ...
We have developed a publicly accessible database (ALFRED, the ALlele FREquency Database) that catalogues allele frequency data for a wide range of population samples and DNA polym...
Kei-Hoi Cheung, Michael V. Osier, Judith R. Kidd, ...
Knowledge scouts are software agents that autonomously search for and synthesize user-oriented knowledge (target knowledge) in large local or distributed databases. A knowledge ge...
Background: Most profile and motif databases strive to classify protein sequences into a broad spectrum of protein families. The next step of such database studies should include ...
The process of building a new database relevant to some field of study in biomedicine involves transforming, integrating, and cleansing multiple data sources, as well as adding ne...
Background: Multi-locus sequence typing (MLST) is a method of typing that facilitates the discrimination of microbial isolates by comparing the sequences of housekeeping gene frag...
Keith A. Jolley, Man-Suen Chan, Martin C. J. Maide...
Many valuable text databases on the web have non-crawlable contents that are "hidden" behind search interfaces. Metasearchers are helpful tools for searching over multip...
Background: SRS (Sequence Retrieval System) has proven to be a valuable platform for storing, linking, and querying biological databases. Due to the availability of a broad range ...
Antoine Veldhoven, Don de Lange, Marcel Smid, Vict...
Background: Structural and functional research often requires the computation of sets of protein structures based on certain properties of the proteins, such as sequence features,...
Background: The generation of large amounts of microarray data presents challenges for data collection, annotation, exchange and analysis. Although there are now widely accepted f...