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DILS
2008
Springer
14 years 2 months ago
Analyzing the Evolution of Life Science Ontologies and Mappings
Abstract. Ontologies are heavily developed and used in life sciences and undergo continuous changes. However, the evolution of life science ontologies and references to them (e.g.,...
Michael Hartung, Toralf Kirsten, Erhard Rahm
DILS
2008
Springer
14 years 2 months ago
Semi Supervised Spectral Clustering for Regulatory Module Discovery
We propose a novel semi-supervised clustering method for the task of gene regulatory module discovery. The technique uses data on dna binding as prior knowledge to guide the proces...
Alok Mishra, Duncan Gillies
DILS
2008
Springer
14 years 2 months ago
Ontologies and Data Integration in Biomedicine: Success Stories and Challenging Issues
In this presentation, we review some examples of successful biomedical data integration projects in which ontologies play an important role, including the integration of genomic da...
Olivier Bodenreider
DILS
2008
Springer
14 years 2 months ago
Ontology Design Principles and Normalization Techniques in the Web
The open, decentralized nature of the Semantic Web demands fundamental changes in our approach to ontology development and deployment. To maximize the expressiveness and robustnes...
Xiaoshu Wang, Jonas S. Almeida, Arlindo L. Oliveir...
DILS
2008
Springer
14 years 2 months ago
Automatic Methods for Integrating Biomedical Data Sources in a Mediator-Based System
Fleur Mougin, Anita Burgun, Olivier Bodenreider, J...
DILS
2008
Springer
14 years 2 months ago
Chemical Knowledge for the Semantic Web
With over 80 file formats to represent various chemical attributes, the conversion between one format and another is invariably lossy due to informal specifications. In contrast, t...
Mykola Konyk, Alexander De Leon Battista, Michel D...
DILS
2008
Springer
14 years 2 months ago
VisGenome and Ensembl: Usability of Integrated Genome Maps
It is not always clear how best to represent integrated data sets, and which application and database features allow a scientist to take best advantage of data coming from various ...
Joanna Jakubowska, Ela Hunt, John McClure, Matthew...
DILS
2008
Springer
14 years 2 months ago
A System for Ontology-Based Annotation of Biomedical Data
Clement Jonquet, Mark A. Musen, Nigam Shah
DILS
2008
Springer
14 years 2 months ago
Data Integration in the Life Sciences: Fun, Findings and Frustrations
This paper concerns the research topic of data integration in the life sciences. The paper presents no technical results, but rather provides a classification of research activitie...
Norman W. Paton