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NAR
2000
120views more  NAR 2000»
14 years 6 days ago
SCOP: a Structural Classification of Proteins database
The Structural Classification of Proteins (SCOP) database provides a detailed and comprehensive description of the relationships of all known proteins structures. The classificati...
Loredana Lo Conte, Bart Ailey, Tim J. P. Hubbard, ...
BMCBI
2005
72views more  BMCBI 2005»
14 years 10 days ago
Shortest triplet clustering: reconstructing large phylogenies using representative sets
Background: Understanding the evolutionary relationships among species based on their genetic information is one of the primary objectives in phylogenetic analysis. Reconstructing...
Le Sy Vinh, Arndt von Haeseler
DAM
2007
153views more  DAM 2007»
14 years 12 days ago
Computing the minimum number of hybridization events for a consistent evolutionary history
It is now well-documented that the structure of evolutionary relationships between a set of present-day species is not necessarily tree-like. The reason for this is that reticulat...
Magnus Bordewich, Charles Semple
BMCBI
2008
102views more  BMCBI 2008»
14 years 17 days ago
PhyloNet: a software package for analyzing and reconstructing reticulate evolutionary relationships
Background: Phylogenies, i.e., the evolutionary histories of groups of taxa, play a major role in representing the interrelationships among biological entities. Many software tool...
Cuong Than, Derek A. Ruths, Luay Nakhleh
ESA
2008
Springer
106views Algorithms» more  ESA 2008»
14 years 2 months ago
An Experimental Analysis of Robinson-Foulds Distance Matrix Algorithms
In this paper, we study two fast algorithms--HashRF and PGM-Hashed--for computing the Robinson-Foulds (RF) distance matrix between a collection of evolutionary trees. The RF distan...
Seung-Jin Sul, Tiffani L. Williams