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IPPS
2006
IEEE
14 years 6 months ago
Parallelization and performance characterization of protein 3D structure prediction of Rosetta
The prediction of protein 3D structure has become a hot research area in the post-genome era, through which people can understand a protein’s function in health and disease, exp...
Wenlong Li, Tao Wang, Eric Li, D. Baker, Li Jin, S...
IPPS
2006
IEEE
14 years 6 months ago
Design and analysis of matching circuit architectures for a closest match lookup
— This paper investigates the implementation of a number of circuits used to perform a high speed closest value match lookup. The design is targeted particularly for use in a sea...
Kieran McLaughlin, Friederich Kupzog, Holger Blume...
IPPS
2006
IEEE
14 years 6 months ago
Sim-X: parallel system software for interactive multi-experiment computational studies
Advances in high-performance computing have led to the broad use of computational studies in everyday engineering and scientific applications. A single study may require thousand...
Siu-Man Yau, Eitan Grinspun, Vijay Karamcheti, Den...
IPPS
2006
IEEE
14 years 6 months ago
An integrated approach for density control and routing in wireless sensor networks
Wireless Sensor Networks (WSNs) are characterized by having scarce resources. The usual way of designing network functions is to consider them isolatedly, a strategy which may not...
Isabela G. Siqueira, Carlos Mauricio S. Figueiredo...
IPPS
2006
IEEE
14 years 6 months ago
Techniques supporting threadprivate in OpenMP
This paper presents the alternatives available to support threadprivate data in OpenMP and evaluates them. We show how current compilation systems rely on custom techniques for im...
Xavier Martorell, Marc González, Alejandro ...
IPPS
2006
IEEE
14 years 6 months ago
Parallelizing post-placement timing optimization
This paper presents an efficient modeling scheme and a partitioning heuristic for parallelizing VLSI post-placement timing optimization. Encoding the paths with timing violations...
Jiyoun Kim, Marios C. Papaefthymiou, José N...
IPPS
2006
IEEE
14 years 6 months ago
Statistical sampling of microarchitecture simulation
Thomas F. Wenisch, Roland E. Wunderlich, Babak Fal...
IPPS
2006
IEEE
14 years 6 months ago
Compiler and runtime support for predictive control of power and cooling
The low cost of clusters built using commodity components has made it possible for many more users to purchase their own supercomputer. However, even modest-sized clusters make si...
Henry G. Dietz, William R. Dieter
IPPS
2006
IEEE
14 years 6 months ago
RAPID: an end-system aware protocol for intelligent data transfer over lambda grids
Next-generation e-Science applications will require the ability to transfer information at high data rates between distributed computing centers and data repositories. To support ...
Amitabha Banerjee, Wu-chun Feng, Biswanath Mukherj...