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ISBRA
2007
Springer
14 years 5 months ago
Reconstruction of 3D Structures from Protein Contact Maps
Proteins are large organic compounds made of amino acids arranged in a linear chain (primary structure). Most proteins fold into unique threedimensional (3D) structures called inte...
Marco Vassura, Luciano Margara, Filippo Medri, Pie...
ISBRA
2007
Springer
14 years 5 months ago
Clustering Algorithms Optimizer: A Framework for Large Datasets
Clustering algorithms are employed in many bioinformatics tasks, including categorization of protein sequences and analysis of gene-expression data. Although these algorithms are r...
Roy Varshavsky, David Horn, Michal Linial
ISBRA
2007
Springer
14 years 5 months ago
A Bootstrap Correspondence Analysis for Factorial Microarray Experiments with Replications
Characterized by simultaneous measurement of the effects of experimental factors and their interactions, the economic and efficient factorial design is well accepted in microarray ...
Qihua Tan, Jesper Dahlgaard, Basem M. Abdallah, We...
ISBRA
2007
Springer
14 years 5 months ago
Coclustering Based Parcellation of Human Brain Cortex Using Diffusion Tensor MRI
The fundamental goal of computational neuroscience is to discover anatomical features that reflect the functional organization of the brain. Investigations of the physical connect...
Cui Lin, Shiyong Lu, Danqing Wu, Jing Hua, Otto Mu...
ISBRA
2007
Springer
14 years 5 months ago
Delta: A Toolset for the Structural Analysis of Biological Sequences on a 3D Triangular Lattice
Abstract. The lattice approach to biological structural analysis was made popular by the HP model for protein folding, but had not been used previously for RNA secondary structure ...
Minghui Jiang, Martin Mayne, Joel Gillespie
ISBRA
2007
Springer
14 years 5 months ago
Algorithm for Haplotype Inferring Via Galled-Tree Networks with Simple Galls
Arvind Gupta, Ján Manuch, Ladislav Stacho, ...
ISBRA
2007
Springer
14 years 5 months ago
GFBA: A Biclustering Algorithm for Discovering Value-Coherent Biclusters
Clustering has been one of the most popular approaches used in gene expression data analysis. A clustering method is typically used to partition genes according to their similarity...
Xubo Fei, Shiyong Lu, Horia F. Pop, Lily R. Liang
ISBRA
2007
Springer
14 years 5 months ago
Wavelet Image Interpolation (WII): A Wavelet-Based Approach to Enhancement of Digital Mammography Images
Abstract. Cancer detection using mammography focuses on characteristics of tiny microcalcifications, including the number, size, and spatial arrangement of microcalcification clu...
Gordana Derado, F. DuBois Bowman, Rajan Patel, Mar...
ISBRA
2007
Springer
14 years 5 months ago
Estimating Bacterial Diversity from Environmental DNA: A Maximum Likelihood Approach
The ability to measure bacterial diversity is a prerequisite for the systematic study of bacterial biogeography and ecology. In this paper we describe a method of estimating divers...
Frederick Cohan, Danny Krizanc, Yun Lu
ISBRA
2007
Springer
14 years 5 months ago
Noise-Based Feature Perturbation as a Selection Method for Microarray Data
Abstract. DNA microarrays can monitor the expression levels of thousands of genes simultaneously, providing the opportunity for the identification of genes that are differentiall...
Li Chen, Dmitry B. Goldgof, Lawrence O. Hall, Stev...