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BMCBI
2006
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13 years 11 months ago
Optimizing amino acid substitution matrices with a local alignment kernel
Background: Detecting remote homologies by direct comparison of protein sequences remains a challenging task. We had previously developed a similarity score between sequences, cal...
Hiroto Saigo, Jean-Philippe Vert, Tatsuya Akutsu
COLING
2008
14 years 27 days ago
A Local Alignment Kernel in the Context of NLP
This paper discusses local alignment kernels in the context of the relation extraction task. We define a local alignment kernel based on the Smith-Waterman measure as a sequence s...
Sophia Katrenko, Pieter W. Adriaans