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BMCBI
2006
165views more  BMCBI 2006»
13 years 11 months ago
Improving the quality of protein structure models by selecting from alignment alternatives
Background: In the area of protein structure prediction, recently a lot of effort has gone into the development of Model Quality Assessment Programs (MQAPs). MQAPs distinguish hig...
Ingolf Sommer, Stefano Toppo, Oliver Sander, Thoma...
BMCBI
2006
110views more  BMCBI 2006»
13 years 11 months ago
Modelling the network of cell cycle transcription factors in the yeast Saccharomyces cerevisiae
Background: Reverse-engineering regulatory networks is one of the central challenges for computational biology. Many techniques have been developed to accomplish this by utilizing...
Shawn Cokus, Sherri Rose, David Haynor, Niels Gr&o...
IANDC
2008
112views more  IANDC 2008»
13 years 11 months ago
Inclusion dynamics hybrid automata
Hybrid systems are dynamical systems with the ability to describe mixed discretecontinuous evolution of a wide range of systems. Consequently, at first glance, hybrid systems appe...
Alberto Casagrande, Carla Piazza, Alberto Policrit...
BMCBI
2006
108views more  BMCBI 2006»
13 years 11 months ago
Gene function classification using Bayesian models with hierarchy-based priors
We investigate the application of hierarchical classification schemes to the annotation of gene function based on several characteristics of protein sequences including phylogenic ...
Babak Shahbaba, Radford M. Neal
BMCBI
2006
151views more  BMCBI 2006»
13 years 11 months ago
Modeling Sage data with a truncated gamma-Poisson model
Background: Serial Analysis of Gene Expressions (SAGE) produces gene expression measurements on a discrete scale, due to the finite number of molecules in the sample. This means t...
Helene H. Thygesen, Aeilko H. Zwinderman
GPEM
2008
128views more  GPEM 2008»
13 years 11 months ago
Coevolutionary bid-based genetic programming for problem decomposition in classification
In this work a cooperative, bid-based, model for problem decomposition is proposed with application to discrete action domains such as classification. This represents a significan...
Peter Lichodzijewski, Malcolm I. Heywood
GPEM
2008
98views more  GPEM 2008»
13 years 11 months ago
Sporadic model building for efficiency enhancement of the hierarchical BOA
Efficiency enhancement techniques--such as parallelization and hybridization--are among the most important ingredients of practical applications of genetic and evolutionary algori...
Martin Pelikan, Kumara Sastry, David E. Goldberg
FAC
2008
97views more  FAC 2008»
13 years 11 months ago
A functional formalization of on chip communications
This paper presents a formal model and a systematic approach to the validation of communication tures at a high level of abstraction. This model is described mathematically by a fu...
Julien Schmaltz, Dominique Borrione
EOR
2008
66views more  EOR 2008»
13 years 11 months ago
A note on "Two-warehouse inventory model with deterioration under FIFO dispatch policy"
A recently published paper by Lee [C.C. Lee, Two-warehouse inventory model with deterioration under FIFO dispatching policy, European Journal of Operational Research 174 (2006) 86...
Bo Niu, Jinxing Xie
ENVSOFT
2008
55views more  ENVSOFT 2008»
13 years 11 months ago
A simple algorithm for yield estimates: Evaluation for semi-arid irrigated winter wheat monitored with green leaf area index
In this study we investigated the perspective offered by coupling a simple vegetation growth model and ground-based remotely-sensed data for the monitoring of wheat production. A ...
Benoît Duchemin, Philippe Maisongrande, Gill...