RECOMB
2012
Springer
12 years 2 months ago
2012
Springer
We develop a novel and general approach to estimating the accuracy of protein multiple sequence alignments without knowledge of a reference alignment, and use our approach to addre...
NAR
2011
13 years 3 months ago
2011
We updated the plant transcription factor (TF) database to version 2.0 (PlantTFDB 2.0, http:// planttfdb.cbi.pku.edu.cn) which contains 53 319 putative TFs predicted from 49 speci...
NAR
2007
13 years 12 months ago
2007
Multiple sequence alignments are essential in homology inference, structure modeling, functional prediction and phylogenetic analysis. We developed a web server that constructs mu...
NAR
2007
13 years 12 months ago
2007
COMPASS is a method for homology detection and local alignment construction based on the comparison of multiple sequence alignments (MSAs). The method derives numerical profiles f...
BMCBI
2004
14 years 9 days ago
2004
Background: Profile-based analysis of multiple sequence alignments (MSA) allows for accurate comparison of protein families. Here, we address the problems of detecting statistical...
BMCBI
2004
14 years 9 days ago
2004
Background: Computer programs for the generation of multiple sequence alignments such as "Clustal W" allow detection of regions that are most conserved among many sequen...
BMCBI
2004
14 years 9 days ago
2004
Background: Alignment and comparison of related genome sequences is a powerful method to identify regions likely to contain functional elements. Such analyses are data intensive, ...
BMCBI
2005
14 years 10 days ago
2005
Background: The alignment of multiple protein sequences is a fundamental step in the analysis of biological data. It has traditionally been applied to analyzing protein families f...
NAR
2008
14 years 11 days ago
2008
Multiple sequence alignments are essential in computational sequence and structural analysis, with applications in homology detection, structure modeling, function prediction and ...
NAR
2008
14 years 11 days ago
2008
The Generation Challenge Programme (GCP; www.generationcp.org) has developed an online resource documenting stress-responsive genes comparatively across plant species. This public...