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NAR
2008
103views more  NAR 2008»
13 years 6 months ago
STITCH: interaction networks of chemicals and proteins
The knowledge about interactions between proteins and small molecules is essential for the understanding of molecular and cellular functions. However, information on such interact...
Michael Kuhn 0004, Christian von Mering, Monica Ca...
NAR
2008
119views more  NAR 2008»
13 years 6 months ago
TreeFam: 2008 Update
TreeFam (http://www.treefam.org) was developed to provide curated phylogenetic trees for all animal gene families, as well as orthologue and paralogue assignments. Release 4.0 of ...
Jue Ruan, Heng Li, Zhongzhong Chen, Avril Coghlan,...
NAR
2008
122views more  NAR 2008»
13 years 6 months ago
EPGD: a comprehensive web resource for integrating and displaying eukaryotic paralog/paralogon information
Gene duplication is common in all three domains of life, especially in eukaryotic genomes. The duplicates provide new material for the action of evolutionary forces such as select...
Guohui Ding, Yan Sun, Hong Li, Zhen Wang, Haiwei F...
NAR
2008
127views more  NAR 2008»
13 years 6 months ago
miRBase: tools for microRNA genomics
miRBase is the central online repository for microRNA (miRNA) nomenclature, sequence data, annotation and target prediction. The current release (10.0) contains 5071 miRNA loci fr...
Sam Griffiths-Jones, Harpreet Kaur Saini, Stijn va...
NAR
2008
62views more  NAR 2008»
13 years 6 months ago
TOPDB: topology data bank of transmembrane proteins
Gábor E. Tusnády, Lajos Kalmá...
NAR
2008
103views more  NAR 2008»
13 years 6 months ago
The Generation Challenge Programme comparative plant stress-responsive gene catalogue
The Generation Challenge Programme (GCP; www.generationcp.org) has developed an online resource documenting stress-responsive genes comparatively across plant species. This public...
Samart Wanchana, Supat Thongjuea, Victor Jun M. Ul...
NAR
2008
85views more  NAR 2008»
13 years 6 months ago
Panzea: an update on new content and features
Panzea (http://www.panzea.org), the public web site of the project `Molecular and Functional Diversity in the Maize Genome', has expanded over the past two years in data cont...
Payan Canaran, Edward S. Buckler, Jeffrey Glaubitz...
NAR
2008
103views more  NAR 2008»
13 years 6 months ago
DBD--taxonomically broad transcription factor predictions: new content and functionality
DNA-binding domain (DBD) is a database of predicted sequence-specific DNA-binding transcription factors (TFs) for all publicly available proteomes. The proteomes have increased fr...
Derek Wilson, Varodom Charoensawan, Sarah K. Kumme...
NAR
2008
77views more  NAR 2008»
13 years 6 months ago
ORegAnno: an open-access community-driven resource for regulatory annotation
Obi L. Griffith, Stephen Montgomery, Bridget Berni...
NAR
2008
78views more  NAR 2008»
13 years 6 months ago
InParanoid 6: eukaryotic ortholog clusters with inparalogs
The InParanoid eukaryotic ortholog database (http://InParanoid.sbc.su.se/) has been updated to version 6 and is now based on 35 species. We collected all available `complete'...
Ann-Charlotte Berglund, Erik Sjölund, Gabriel...