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NAR
2008
119views more  NAR 2008»
13 years 11 months ago
Phospho.ELM: a database of phosphorylation sites - update 2008
Phospho.ELM is a manually curated database of eukaryotic phosphorylation sites. The resource includes data collected from published literature as well as high-throughput data sets...
Francesca Diella, Cathryn M. Gould, Claudia Chica,...
NAR
2008
107views more  NAR 2008»
13 years 11 months ago
MutDB: update on development of tools for the biochemical analysis of genetic variation
Understanding how genetic variation affects the molecular function of gene products is an emergent area of bioinformatic research. Here, we present updates to MutDB (http://www.mu...
Arti Singh, Adebayo Olowoyeye, Peter H. Baenziger,...
NAR
2008
223views more  NAR 2008»
13 years 11 months ago
AtPID: Arabidopsis thaliana protein interactome database - an integrative platform for plant systems biology
Arabidopsis thaliana Protein Interactome Database (AtPID) is an object database that integrates data from several bioinformatics prediction methods and manually collected informat...
Jian Cui, Peng Li, Guang Li, Feng Xu, Chen Zhao, Y...
NAR
2008
119views more  NAR 2008»
13 years 11 months ago
MALISAM: a database of structurally analogous motifs in proteins
MALISAM (manual alignments for structurally analogous motifs) represents the first database containing pairs of structural analogs and their alignments. To find reliable analogs, ...
Hua Cheng, Bong-Hyun Kim, Nick V. Grishin
NAR
2008
122views more  NAR 2008»
13 years 11 months ago
SIMAP - structuring the network of protein similarities
Protein sequences are the most important source of evolutionary and functional information for new proteins. In order to facilitate the computationally intensive tasks of sequence...
Thomas Rattei, Patrick Tischler, Roland Arnold, Fr...
NAR
2008
90views more  NAR 2008»
13 years 11 months ago
Many Microbe Microarrays Database: uniformly normalized Affymetrix compendia with structured experimental metadata
Many Microbe Microarrays Database (M3D ) is designed to facilitate the analysis and visualization of expression data in compendia compiled from multiple laboratories. M3D contains...
Jeremiah J. Faith, Michael E. Driscoll, Vincent A....
NAR
2008
89views more  NAR 2008»
13 years 11 months ago
CATdb: a public access to Arabidopsis transcriptome data from the URGV-CATMA platform
CATdb is a free resource available at http://urgv. evry.inra.fr/CATdb that provides public access to a large collection of transcriptome data for Arabidopsis thaliana produced by ...
Séverine Gagnot, Jean-Philippe Tamby, Marie...
NAR
2008
71views more  NAR 2008»
13 years 11 months ago
EuroPhenome and EMPReSS: online mouse phenotyping resource
EuroPhenome (http://www.europhenome.org) and EMPReSS (http://empress.har.mrc.ac.uk/) form an integrated resource to provide access to data and procedures for mouse phenotyping. EM...
Ann-Marie Mallon, Andrew Blake, John M. Hancock
NAR
2008
74views more  NAR 2008»
13 years 11 months ago
Gene Ontology annotations at SGD: new data sources and annotation methods
The Saccharomyces Genome Database (SGD; http:// www.yeastgenome.org/) collects and organizes biological information about the chromosomal features and gene products of the budding...
Eurie L. Hong, Rama Balakrishnan, Qing Dong, Karen...
NAR
2008
141views more  NAR 2008»
13 years 11 months ago
MethyCancer: the database of human DNA methylation and cancer
Cancer is ranked as one of the top killers in all human diseases and continues to have a devastating effect on the population around the globe. Current research efforts are aiming...
Ximiao He, Suhua Chang, Jiajie Zhang, Qian Zhao, H...