phylogenetic reconstruction

30

ALMOB
2008

85views more ALMOB 2008»

Noisy: Identification of problematic columns in multiple sequence alignments

13 years 11 months ago

Motivation: Sequence-based methods for phylogenetic reconstruction from (nucleic acid) sequence data are notoriously plagued by two effects: homoplasies and alignment errors. Larg...

Andreas W. M. Dress, Christoph Flamm, Guido Fritzs...

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31

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SODA
2008
ACM

104views Algorithms» more SODA 2008»

Fast and reliable reconstruction of phylogenetic trees with very short edges

14 years 26 days ago

Download www.cs.technion.ac.il

Abstract Ilan Gronau Shlomo Moran Sagi Snir Phylogenetic reconstruction is the problem of reconstructing an evolutionary tree from sequences corresponding to leaves of that tree. ...

Ilan Gronau, Shlomo Moran, Sagi Snir

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48

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BIBE
2007
IEEE

126views Bioinformatics» more BIBE 2007»

FPGA Acceleration of Phylogeny Reconstruction for Whole Genome Data

14 years 1 months ago

Download www.cse.sc.edu

In this paper we describe our design and characterization of a co-processor architecture to accelerate median-based phylogenetic reconstruction for generearrangement data. Our curr...

Jason D. Bakos, Panormitis E. Elenis, Jijun Tang

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31

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CIBCB
2007
IEEE

128views Computational Biology» more CIBCB 2007»

An Experimental Evaluation of Inversion-and Transposition-Based Genomic Distances through Simulations

14 years 5 months ago

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— Rearrangements of genes and other syntenic blocks have become a topic of intensive study by phylogenists, comparative genomicists, and computational biologists: they are a feat...

Moulik Kothari, Bernard M. E. Moret

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