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BMCBI
2007
131views more  BMCBI 2007»
14 years 13 days ago
An improved method for identifying functionally linked proteins using phylogenetic profiles
Background: Phylogenetic profiles record the occurrence of homologs of genes across fully sequenced organisms. Proteins with similar profiles are typically components of protein c...
Shawn Cokus, Sayaka Mizutani, Matteo Pellegrini
CANDC
2006
ACM
14 years 15 days ago
Domain boundary prediction based on profile domain linker propensity index
Successful prediction of protein domain boundaries provides valuable information not only for the computational structure prediction of multidomain proteins but also for the exper...
Qiwen Dong, Xiaolong Wang, Lei Lin, Zhiming Xu
BMCBI
2006
94views more  BMCBI 2006»
14 years 15 days ago
Novel knowledge-based mean force potential at the profile level
Background: The development and testing of functions for the modeling of protein energetics is an important part of current research aimed at understanding protein structure and f...
Qiwen Dong, Xiaolong Wang, Lei Lin
BMCBI
2006
143views more  BMCBI 2006»
14 years 15 days ago
Application of protein structure alignments to iterated hidden Markov model protocols for structure prediction
Background: One of the most powerful methods for the prediction of protein structure from sequence information alone is the iterative construction of profile-type models. Because ...
Eric D. Scheeff, Philip E. Bourne
BMCBI
2006
95views more  BMCBI 2006»
14 years 15 days ago
Discrete profile comparison using information bottleneck
Sequence homologs are an important source of information about proteins. Amino acid profiles, representing the position-specific mutation probabilities found in profiles, are a ri...
Sean O'Rourke, Gal Chechik, Robin Friedman, Eleaza...
BMCBI
2006
163views more  BMCBI 2006»
14 years 15 days ago
Ensemble attribute profile clustering: discovering and characterizing groups of genes with similar patterns of biological featur
Background: Ensemble attribute profile clustering is a novel, text-based strategy for analyzing a userdefined list of genes and/or proteins. The strategy exploits annotation data ...
J. R. Semeiks, A. Rizki, Mina J. Bissell, I. Saira...
CORR
2010
Springer
139views Education» more  CORR 2010»
14 years 16 days ago
Link creation and profile alignment in the aNobii social network
The present work investigates the structural and dynamical properties of aNobii1 , a social bookmarking system designed for readers and book lovers. Users of aNobii provide informa...
Luca Maria Aiello, Alain Barrat, Ciro Cattuto, Gia...
COMCOM
2008
100views more  COMCOM 2008»
14 years 16 days ago
Individual profile graphs for location management in PCS networks
A user's profile, for the purpose of location management in a personal communication service (PCS) network, is formalized as a subgraph of the network graph. This subgraph, t...
Chansophea Chuon, Sumanta Guha
CORR
2010
Springer
67views Education» more  CORR 2010»
14 years 16 days ago
Profile Popularity in a Business-oriented Online Social Network
Abstract--Analysing Online Social Networks (OSN), voluntarily maintained and automatically exploitable databases of electronic personal information, promises a wealth of insight in...
Thorsten Strufe
BMCBI
2007
105views more  BMCBI 2007»
14 years 17 days ago
Text-derived concept profiles support assessment of DNA microarray data for acute myeloid leukemia and for androgen receptor sti
Background: High-throughput experiments, such as with DNA microarrays, typically result in hundreds of genes potentially relevant to the process under study, rendering the interpr...
Rob Jelier, Guido Jenster, Lambert C. J. Dorssers,...