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ISMB
2004
13 years 8 months ago
Predicting protein folding pathways
Keywords PRIMARY: protein structure comparison SECONDARY: protein structure prediction OTHER: protein folding pathway
Mohammed Javeed Zaki, Vinay Nadimpally, Deb Bardha...
APBC
2003
134views Bioinformatics» more  APBC 2003»
13 years 8 months ago
A Framework for Improving Protein Structure Predictions by Teamwork
Predicting the three dimensional structure of proteins is a difficult task. In the last years several approaches have been proposed for performing this task taking into account d...
Luigi Palopoli, Giorgio Terracina
APBC
2004
125views Bioinformatics» more  APBC 2004»
13 years 8 months ago
A Dihedral Angle Database of Short Sub-sequences for Protein Structure Prediction
Protein structure prediction is considered to be the holy grail of bioinformatics. Ab initio and homology modelling are two important groups of methods used in protein structure p...
Saravanan Dayalan, Savitri Bevinakoppa, Heiko Schr...
BIBE
2003
IEEE
133views Bioinformatics» more  BIBE 2003»
14 years 22 days ago
A Computational Pipeline for Protein Structure Prediction and Analysis at Genome Scale
The tertiary (3D) structure of a protein contains the essential information for understanding the biological function of the protein at the molecular and cellular levels. Traditio...
Manesh J. Shah, Sergei Passovets, Dongsup Kim, Kyl...
EVOW
2004
Springer
14 years 25 days ago
A Memetic Algorithm for Protein Structure Prediction in a 3D-Lattice HP Model
This paper presents a memetic algorithm with self-adaptive local search, applied to protein structure prediction in an HP, cubiclattice model. Besides describing in detail how the ...
Andrea Bazzoli, Andrea Tettamanzi
LPAR
2005
Springer
14 years 28 days ago
A New Constraint Solver for 3D Lattices and Its Application to the Protein Folding Problem
Abstract. The paper describes the formalization and implementation of an efficient constraint programming framework operating on 3D crystal lattices. The framework is motivated an...
Alessandro Dal Palù, Agostino Dovier, Enric...
AE
2005
Springer
14 years 29 days ago
An Enhanced Genetic Algorithm for Protein Structure Prediction Using the 2D Hydrophobic-Polar Model
This paper presents an enhanced genetic algorithm for the protein structure prediction problem. A new fitness function, that uses the concept of radius of gyration, is proposed. Al...
Heitor S. Lopes, Marcos P. Scapin
CSB
2005
IEEE
129views Bioinformatics» more  CSB 2005»
14 years 1 months ago
Rule Clustering and Super-rule Generation for Transmembrane Segments Prediction
The explanation of a decision is important for the acceptance of machine learning technology in bioinformatics applications such as protein structure prediction. In past research,...
Jieyue He, Bernard Chen, Hae-Jin Hu, Robert W. Har...
IPPS
2006
IEEE
14 years 1 months ago
Parallelization and performance characterization of protein 3D structure prediction of Rosetta
The prediction of protein 3D structure has become a hot research area in the post-genome era, through which people can understand a protein’s function in health and disease, exp...
Wenlong Li, Tao Wang, Eric Li, D. Baker, Li Jin, S...
IPPS
2007
IEEE
14 years 1 months ago
A Comparative Study of Parallel Metaheuristics for Protein Structure Prediction on the Computational Grid
A comparative study of parallel metaheuristics executed in grid environments is proposed, having as case study a genetic algorithm, a simulated annealing algorithm and a random se...
Alexandru-Adrian Tantar, Nouredine Melab, El-Ghaza...