RECOMB
2007
Springer
15 years 23 days ago
2007
Springer
Most tandem mass spectrum identification algorithms use information only from the final spectrum, ignoring precursor information such as peptide retention time (RT). Efforts to exp...
RECOMB
2007
Springer
15 years 23 days ago
2007
Springer
Abstract. An important problem in biology is to understand correspondences between mRNA microarray levels and mass spectrometry peptide counts. Recently, a compendium of mRNA expre...
RECOMB
2007
Springer
15 years 23 days ago
2007
Springer
We present a technique for approximating the free energy of protein structures using Generalized Belief Propagation (GBP). The accuracy and utility of these estimates are then demo...
RECOMB
2007
Springer
15 years 23 days ago
2007
Springer
Reticulate networks are a type of phylogenetic network that are used to represent reticulate evolution involving hybridization, horizontal gene transfer or recombination. The simpl...
RECOMB
2007
Springer
15 years 23 days ago
2007
Springer
Determining the precise spatial extent of expression of genes across different tissues, along with knowledge of the biochemical function of the genes is critical for understanding ...
RECOMB
2007
Springer
15 years 23 days ago
2007
Springer
The study of biological networks and network motifs can yield significant new insights into systems biology. Previous methods of discovering network motifs ? network-centric subgra...
RECOMB
2007
Springer
15 years 23 days ago
2007
Springer
With the increasing availability of experimental data on gene-gene and protein-protein interactions, modeling of gene regulatory networks has gained a special attention lately. To ...
RECOMB
2007
Springer
15 years 23 days ago
2007
Springer
Abstract. Recent advances in high-throughput experimental techniques have enabled the production of a wealth of protein interaction data, rich in both quantity and variety. While t...
RECOMB
2007
Springer
15 years 23 days ago
2007
Springer
High-resolution array comparative genomic hybridization (aCGH) provides exon-level mapping of DNA aberrations in cells or tissues. Such aberrations are central to carcinogenesis an...
RECOMB
2007
Springer
15 years 23 days ago
2007
Springer
Abstract. Given the substantial computational requirements of stochastic simulation, approximation is essential for efficient analysis of any realistic biochemical system. This pap...