RECOMB
2008
Springer
14 years 12 months ago
2008
Springer
Abstract. One phylogeny-based approach to horizontal gene transfer (HGT) detection entails comparing the topology of a gene tree to that of the species tree, and using their differ...
RECOMB
2008
Springer
14 years 12 months ago
2008
Springer
We describe algorithms to explore the space of all possible reconciliations between a gene tree and a species tree. We propose an algorithm for generating a random reconciliation, ...
RECOMB
2008
Springer
14 years 12 months ago
2008
Springer
Here we identify duplicated genes in five mammalian genomes and classify these duplicates based on the mechanisms by which they were generated. Retrotransposition accounts for at l...
RECOMB
2008
Springer
14 years 12 months ago
2008
Springer
The development of high-resolution microscopy makes possible the high-throughput screening of cellular information, such as gene expression at single cell resolution. One of the cr...
RECOMB
2008
Springer
14 years 12 months ago
2008
Springer
We developed Gr?mlin 2.0, a new multiple network aligner with (1) a novel scoring function that can use arbitrary features of a multiple network alignment, such as protein deletion...
RECOMB
2008
Springer
14 years 12 months ago
2008
Springer
Abstract. This paper presents an algorithm to detect lateral gene transfer (LGT) on the basis of pairwise evolutionary distances. The prediction is made from a likelihood ratio der...
RECOMB
2008
Springer
14 years 12 months ago
2008
Springer
Understanding the variation of recombination rates across a given genome is crucial for disease gene mapping and for detecting signatures of selection, to name just a couple of app...
RECOMB
2008
Springer
14 years 12 months ago
2008
Springer
Abstract. While nonribosomal peptides (NRPs) are of tremendous pharmacological importance, there is currently no technology capable of highthroughput sequencing of NRPs. Difficulti...
RECOMB
2008
Springer
14 years 12 months ago
2008
Springer
We report on a new algorithm for combining the information from several mass spectra of the same peptide. The algorithm automatically learns peptide fragmentation patterns, so that...
RECOMB
2008
Springer
14 years 12 months ago
2008
Springer
The protein inference problem represents a major challenge in shotgun proteomics. Here we describe a novel Bayesian approach to address this challenge that incorporates the predict...