BIOCOMP
2009
14 years 1 months ago
2009
The accurate computational prediction of RNA secondary structures is a difficult task, but an important one, since RNA structure is usually more evolutionarily conserved than prima...
METMBS
2004
14 years 1 months ago
2004
Abstract One approach to predict the secondary structure of RNA is the comparative approach. This approach is used when alignment of several homologous sequences of a RNA is availa...
ISMB
2004
14 years 1 months ago
2004
Motivation: Non-coding RNAs (ncRNAs)--functional RNA molecules not coding for proteins--are grouped into hundreds of families of homologs. To find new members of an ncRNA gene fam...
CDES
2006
14 years 1 months ago
2006
Predicting protein secondary structure is a key step in determining the 3D structure of a protein that determines its function. The Dictionary of Secondary Structure of Proteins (...
BIOCOMP
2006
14 years 1 months ago
2006
We carry out a comprehensive study of long-range interactions on a large data set of non-homologous proteins. Our study reveals that the long-range interactions between amino acid...
DMKD
2003
ACM
14 years 5 months ago
2003
ACM
Given a known protein sequence, predicting its secondary structure can help understand its three-dimensional (tertiary) structure, i.e., the folding. In this paper, we present an ...
SSDBM
2003
IEEE
14 years 5 months ago
2003
IEEE
Life science researchers frequently need to query large protein data sets in a variety of different ways. Protein data sets have a rich structure that includes its primary structu...
ISAAC
2004
Springer
14 years 5 months ago
2004
Springer
RNA molecules whose secondary structures contain similar substructures often have similar functions. Therefore, an important task in the study of RNA is to develop methods for disc...
WABI
2005
Springer
14 years 6 months ago
2005
Springer
Abstract Baharak Rastegari and Anne Condon Department of Computer Science, University of British Columbia Abstract. Accurate prediction of pseudoknotted RNA secondary structure is ...
CSB
2005
IEEE
14 years 6 months ago
2005
IEEE
RNAMute is an interactive web tool written in Java that calculates the secondary structure of all single point mutations, given an RNA sequence, and organizes them into categories...