CONCURRENCY
2010
13 years 11 months ago
2010
With the rapid replacement of closed, homogeneous, proprietary HPC systems by heterogeneous, Linux-MPI cluster systems, the state of performance monitoring and analysis tools has ...
BMCBI
2008
13 years 11 months ago
2008
Background: In recent years, substantial effort has been applied to de novo regulatory motif discovery. At this time, more than 150 software tools exist to detect regulatory bindi...
BMCBI
2008
13 years 11 months ago
2008
Background: In systems biology, and many other areas of research, there is a need for the interoperability of tools and data sources that were not originally designed to be integr...
BMCBI
2007
13 years 11 months ago
2007
Background: To interpret microarray experiments, several ontological analysis tools have been developed. However, current tools are limited to specific organisms. Results: We deve...
BMCBI
2008
13 years 11 months ago
2008
Background: The identification of specific gene expression signature for distinguishing sample groups is a dominant field in cancer research. Although a number of tools have been ...
BMCBI
2010
13 years 11 months ago
2010
Background: Non-coding RNAs gain more attention as their diverse roles in many cellular processes are discovered. At the same time, the need for efficient computational prediction...
BMCBI
2007
13 years 11 months ago
2007
Background: The ability to visualize genomic features and design experimental assays that can target specific regions of a genome is essential for modern biology. To assist in the...
BMCBI
2008
13 years 11 months ago
2008
Background: R is the preferred tool for statistical analysis of many bioinformaticians due in part to the increasing number of freely available analytical methods. Such methods ca...
BMCBI
2010
13 years 11 months ago
2010
Background: Many complementary solutions are available for the identifier mapping problem. This creates an opportunity for bioinformatics tool developers. Tools can be made to fle...
BMCBI
2010
13 years 11 months ago
2010
Background: With the continued development of new computational tools for multiple sequence alignment, it is necessary today to develop benchmarks that aid the selection of the mo...