Approximate Regular Expression Searching with Arbitrary Integer Weights

Abstract. We present a bit-parallel technique to search a text of length n for a regular expression of m symbols permitting k differences in worst case time O(mn/ logk s), where s is the amount of main memory that can be allocated. The algorithm permits arbitrary integer weights and matches the complexity of the best previous techniques, but it is simpler and faster in practice. In our way, we define a new recurrence for approximate searching where the current values depend only on previous values. Interestingly, our algorithm turns out to be a relevant option also for simple approximate string matching with arbitrary integer weights.

• Type: Conference
• Year: 2003
• Where: ISAAC
• Authors: Gonzalo Navarro
• Keywords: Approximate String Matching, Arbitrary Integer Weights, ISAAC 2003, Worst Case Time