Integrating FPGA Acceleration into the Protomol Molecular Dynamics Code: Preliminary Report

: We describe a new pipeline for computing non-bonded forces and its integration into the ProtoMol molecular dynamics (MD) code. There are several innovations: a novel interpolation strategy, including use of higher order terms; coefficient generation

• Type: Conference
• Year: 2006
• Where: FCCM
• Authors: Yongfeng Gu, Tom Van Court, Martin C. Herbordt
• Keywords: FCCM 2006, Hardware, Non-bonded Forces, ProtoMol Molecular Dynamics