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FCCM
2006
IEEE
119views VLSI» more  FCCM 2006»
14 years 1 months ago
Integrating FPGA Acceleration into the Protomol Molecular Dynamics Code: Preliminary Report
: We describe a new pipeline for computing non-bonded forces and its integration into the ProtoMol molecular dynamics (MD) code. There are several innovations: a novel interpolatio...
Yongfeng Gu, Tom Van Court, Martin C. Herbordt
FPL
2006
Springer
123views Hardware» more  FPL 2006»
13 years 11 months ago
Improved Interpolation and System Integration for FPGA-Based Molecular Dynamics Simulations
: FPGA-based acceleration of molecular dynamics (MD) has been the subject of several recent studies. Here we describe a new non-bonded force computation pipeline implemented on a 2...
Yongfeng Gu, Tom Van Court, Martin C. Herbordt
FCCM
2005
IEEE
96views VLSI» more  FCCM 2005»
14 years 29 days ago
Preliminary Report: FPGA Acceleration of Molecular Dynamics Computations
Abstract: Molecular Dynamics (MD) is of central importance to computational chemistry and its myriad applications. Here we show that, at even a preliminary stage of development, MD...
Yongfeng Gu, Tom Van Court, Douglas DiSabello, Mar...