136
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WABI
15 years 6 months ago
2001 Springer 
A central issue in molecular biology is understanding the regulatory mechanisms that control gene expression. The recent flood of genomic and postgenomic data opens the way for co...
123
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WABI
15 years 6 months ago
2001 Springer
We describe algorithms for pattern matching and pattern learning in TOPS diagrams (formal descriptions of protein topologies). These problems can be reduced to checking for subgrap...
120
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WABI
15 years 6 months ago
2001 Springer
Abstract. Comparing gene orders in completely sequenced genomes is a standard approach to locate clusters of functionally associated genes. Often, gene orders are modeled as permut...
111
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WABI
15 years 6 months ago
2001 Springer
Using current technology, large consecutive stretches of DNA (such as whole chromosomes) are usually assembled from short fragments obtained by shotgun sequencing, or from fragment...
118
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WABI
15 years 6 months ago
2001 Springer
We develop fast algorithms for computing the linking number of a simplicial complex within a filtration. We give experimental results in applying our work toward the detection of...
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Bioinformatics