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WABI
2004
Springer
106views Bioinformatics» more  WABI 2004»
14 years 3 months ago
Suboptimal Local Alignments Across Multiple Scoring Schemes
Abstract. Sequence alignment algorithms have a long standing tradition in bioinformatics. In this paper, we formulate an extension to existing local alignment algorithms: local ali...
Morris Michael, Christoph Dieterich, Jens Stoye
WABI
2004
Springer
14 years 3 months ago
The Minisatellite Transformation Problem Revisited: A Run Length Encoded Approach
Abstract. In this paper we present a more efficient algorithm for comparison of minisatellites which has complexity O(n 3 + m 3 + mn 2 + nm 2 + mn) where n and m are the lengths of...
Behshad Behzadi, Jean-Marc Steyaert
WABI
2004
Springer
142views Bioinformatics» more  WABI 2004»
14 years 3 months ago
Linear Reduction for Haplotype Inference
Abstract. Haplotype inference problem asks for a set of haplotypes explaining a given set of genotypes. Popular software tools for haplotype inference (e.g., PHASE, HAPLOTYPER) as ...
Jingwu He, Alexander Zelikovsky
WABI
2004
Springer
14 years 3 months ago
Reconstructing Ancestral Gene Orders Using Conserved Intervals
Conserved intervals were recently introduced as a measure of similarity between genomes whose genes have been shuffled during evolution by genomic rearrangements. Phylogenetic reco...
Anne Bergeron, Mathieu Blanchette, Annie Chateau, ...
Bioinformatics
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