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» A Comparison of Functional and Structural Partitioning
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GECCO
2004
Springer
104views Optimization» more  GECCO 2004»
14 years 2 months ago
Simultaneity Matrix for Solving Hierarchically Decomposable Functions
The simultaneity matrix is an × matrix of numbers. It is constructed according to a set of -bit solutions. The matrix element mij is the degree of linkage between bit positions i ...
Chatchawit Aporntewan, Prabhas Chongstitvatana
BMCBI
2005
92views more  BMCBI 2005»
13 years 8 months ago
Predicting functional sites with an automated algorithm suitable for heterogeneous datasets
Background: In a previous report (La et al., Proteins, 2005), we have demonstrated that the identification of phylogenetic motifs, protein sequence fragments conserving the overal...
David La, Dennis R. Livesay
ISPD
1999
ACM
126views Hardware» more  ISPD 1999»
14 years 1 months ago
Partitioning by iterative deletion
Netlist partitioning is an important and well studied problem. In this paper, a linear time partitioning approach based on iterative deletion is presented. We use the partitioning...
Patrick H. Madden
BMCBI
2005
125views more  BMCBI 2005»
13 years 8 months ago
Query3d: a new method for high-throughput analysis of functional residues in protein structures
Background: The identification of local similarities between two protein structures can provide clues of a common function. Many different methods exist for searching for similar ...
Gabriele Ausiello, Allegra Via, Manuela Helmer-Cit...
JUCS
2007
84views more  JUCS 2007»
13 years 8 months ago
Deriving Consensus for Hierarchical Incomplete Ordered Partitions and Coverings
: A method for determining consensus of hierarchical incomplete ordered partitions and coverings of sets is presented in this chapter. Incomplete ordered partitions and coverings a...
Marcin Hernes, Ngoc Thanh Nguyen