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ASPLOS
2010
ACM
14 years 3 months ago
Cortical architectures on a GPGPU
As the number of devices available per chip continues to increase, the computational potential of future computer architectures grows likewise. While this is a clear benefit for f...
Andrew Nere, Mikko Lipasti
SAC
2009
ACM
14 years 3 months ago
GTfold: a scalable multicore code for RNA secondary structure prediction
The prediction of the correct secondary structures of large RNAs is one of the unsolved challenges of computational molecular biology. Among the major obstacles is the fact that a...
Amrita Mathuriya, David A. Bader, Christine E. Hei...
SC
2005
ACM
14 years 2 months ago
Parallel Programmer Productivity: A Case Study of Novice Parallel Programmers
In developing High-Performance Computing (HPC) software, time to solution is an important metric. This metric is comprised of two main components: the human effort required develo...
Lorin Hochstein, Jeffrey Carver, Forrest Shull, Si...
ICPP
2008
IEEE
14 years 3 months ago
Optimizing JPEG2000 Still Image Encoding on the Cell Broadband Engine
JPEG2000 is the latest still image coding standard from the JPEG committee, which adopts new algorithms such as Embedded Block Coding with Optimized Truncation (EBCOT) and Discret...
Seunghwa Kang, David A. Bader
WALCOM
2010
IEEE
230views Algorithms» more  WALCOM 2010»
14 years 3 months ago
Comparing RNA Structures with Biologically Relevant Operations Cannot Be Done without Strong Combinatorial Restrictions
Abstract. Arc-annotated sequences are useful for representing structural information of RNAs and have been extensively used for comparing RNA structures in both terms of sequence a...
Guillaume Blin, Sylvie Hamel, Stéphane Vial...