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» A Computational Model for RNA Multiple Structural Alignment.
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BMCBI
2010
120views more  BMCBI 2010»
13 years 9 months ago
Estimating true evolutionary distances under rearrangements, duplications, and losses
Background: The rapidly increasing availability of whole-genome sequences has enabled the study of whole-genome evolution. Evolutionary mechanisms based on genome rearrangements h...
Yu Lin, Vaibhav Rajan, Krister M. Swenson, Bernard...
JMLR
2007
137views more  JMLR 2007»
13 years 8 months ago
Building Blocks for Variational Bayesian Learning of Latent Variable Models
We introduce standardised building blocks designed to be used with variational Bayesian learning. The blocks include Gaussian variables, summation, multiplication, nonlinearity, a...
Tapani Raiko, Harri Valpola, Markus Harva, Juha Ka...
PRDC
2006
IEEE
14 years 2 months ago
Detecting and Exploiting Symmetry in Discrete-state Markov Models
Dependable systems are usually designed with multiple instances of components or logical processes, and often possess symmetries that may be exploited in model-based evaluation. T...
W. Douglas Obal II, Michael G. McQuinn, William H....
KDD
2003
ACM
113views Data Mining» more  KDD 2003»
14 years 9 months ago
Indexing multi-dimensional time-series with support for multiple distance measures
Although most time-series data mining research has concentrated on providing solutions for a single distance function, in this work we motivate the need for a single index structu...
Michail Vlachos, Marios Hadjieleftheriou, Dimitrio...
ECCB
2008
IEEE
14 years 3 months ago
Connect the dots: exposing hidden protein family connections from the entire sequence tree
Motivation: Mapping of remote evolutionary links is a classic computational problem of much interest. Relating protein families allows for functional and structural inference on u...
Yaniv Loewenstein, Michal Linial