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» A Data Transformation System for Biological Data Sources
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152
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ISMB
2007
15 years 5 months ago
A Chado case study: an ontology-based modular schema for representing genome-associated biological information
Motivation: A few years ago, FlyBase undertook to design a new database schema to store Drosophila data. It would fully integrate genomic sequence and annotation data with bibliog...
Chris Mungall, David B. Emmert
132
Voted
CORR
2010
Springer
92views Education» more  CORR 2010»
15 years 29 days ago
Benchmarking triple stores with biological data
We have compared the performance of five non-commercial triple stores, Virtuoso-open source, Jena SDB, Jena TDB, SWIFT-OWLIM and 4Store. We examined three performance aspects: the ...
Vladimir Mironov, Nirmala Seethappan, Ward Blond&e...
149
Voted
KDD
2009
ACM
219views Data Mining» more  KDD 2009»
16 years 4 months ago
Structured correspondence topic models for mining captioned figures in biological literature
A major source of information (often the most crucial and informative part) in scholarly articles from scientific journals, proceedings and books are the figures that directly pro...
Amr Ahmed, Eric P. Xing, William W. Cohen, Robert ...
143
Voted
SAC
2005
ACM
15 years 9 months ago
A complex biological database querying method
Many biological information systems rely on relational database management systems (RDBMS) to manage high-throughput biological data. While keeping these data well archived, organ...
Jake Yue Chen, John V. Carlis, Ning Gao
127
Voted
HICSS
2000
IEEE
121views Biometrics» more  HICSS 2000»
15 years 8 months ago
Combining Data from Existing Company Data Sources: Architecture and Experiences
Combining and utilizing data from different sources is a common problem in many companies today. Useful data can be found in various applications, such as spreadsheets, project ma...
Jari Vanhanen, Kai Risku, Pekka Kilponen