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» A Database Platform for Bioinformatics
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EDBT
2012
ACM
246views Database» more  EDBT 2012»
11 years 11 months ago
"Cut me some slack": latency-aware live migration for databases
Cloud-based data management platforms often employ multitenant databases, where service providers achieve economies of scale by consolidating multiple tenants on shared servers. I...
Sean Kenneth Barker, Yun Chi, Hyun Jin Moon, Hakan...
BIBE
2010
IEEE
143views Bioinformatics» more  BIBE 2010»
13 years 10 months ago
The Effect of Sequence Error and Partial Training Data on BLAST Accuracy
- Metagenomics is the study of environmental samples. Because few tools exist for metagenomic analysis, a natural step has been to utilize the popular homology tool, BLAST, to sear...
Steven D. Essinger, Gail L. Rosen
BMCBI
2007
151views more  BMCBI 2007»
13 years 9 months ago
The Genopolis Microarray Database
Background: Gene expression databases are key resources for microarray data management and analysis and the importance of a proper annotation of their content is well understood. ...
Andrea Splendiani, Marco Brandizi, Gael Even, Otta...
IC3
2009
13 years 7 months ago
IDChase: Mitigating Identifier Migration Trap in Biological Databases
A convenient mechanism to refer to large biological objects such as sequences, structures and networks is the use of identifiers or handles, commonly called IDs. IDs function as a ...
Anupam Bhattacharjee, Aminul Islam, Hasan M. Jamil...
APBC
2004
122views Bioinformatics» more  APBC 2004»
13 years 10 months ago
Integrating Biopathway Databases for Large-scale Modeling and Simulation
Biopathway databases have been developed, such as KEGG and EcoCyc, that compile interaction structures of biopathways together with biological annotations. However, these biopathw...
Masao Nagasaki, Atsushi Doi, Hiroshi Matsuno, Sato...