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» A Declarative Framework for Analysis and Optimization
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BMCBI
2005
169views more  BMCBI 2005»
13 years 7 months ago
Genetic interaction motif finding by expectation maximization - a novel statistical model for inferring gene modules from synthe
Background: Synthetic lethality experiments identify pairs of genes with complementary function. More direct functional associations (for example greater probability of membership...
Yan Qi 0003, Ping Ye, Joel S. Bader
IPSN
2007
Springer
14 years 1 months ago
FlashDB: dynamic self-tuning database for NAND flash
FlashDB is a self-tuning database optimized for sensor networks using NAND flash storage. In practical systems flash is used in different packages such as on-board flash chips,...
Suman Nath, Aman Kansal
BMCBI
2008
152views more  BMCBI 2008»
13 years 7 months ago
Predicting biological system objectives de novo from internal state measurements
Background: Optimization theory has been applied to complex biological systems to interrogate network properties and develop and refine metabolic engineering strategies. For examp...
Erwin P. Gianchandani, Matthew A. Oberhardt, Antho...
ICCAD
2003
IEEE
145views Hardware» more  ICCAD 2003»
14 years 4 months ago
Manufacturing-Aware Physical Design
Ultra-deep submicron manufacturability impacts physical design (PD) through complex layout rules and large guardbands for process variability; this creates new requirements for ne...
Puneet Gupta, Andrew B. Kahng
STOC
2004
ACM
121views Algorithms» more  STOC 2004»
14 years 8 months ago
Lower bounds for dynamic connectivity
We prove an (lg n) cell-probe lower bound on maintaining connectivity in dynamic graphs, as well as a more general trade-off between updates and queries. Our bound holds even if t...
Mihai Patrascu, Erik D. Demaine