Background: The binding of regulatory proteins to their specific DNA targets determines the accurate expression of the neighboring genes. The in silico prediction of new binding s...
We present a new bit-parallel technique for approximate string matching. We build on two previous techniques. The first one, BPM [Myers, J. of the ACM, 1999], searches for a patte...
To make efficient use of CMPs with tens to hundreds of cores, it is often necessary to exploit fine-grain parallelism. However, managing tasks of a few thousand instructions is ...
Daniel Sanchez, Richard M. Yoo, Christos Kozyrakis
Background: Identity by descent (IBD) matrix estimation is a central component in mapping of Quantitative Trait Loci (QTL) using variance component models. A large number of algor...
Given a dataset, each element of which labeled by one of k labels, we construct by a very fast algorithm, a k-category proximal support vector machine (PSVM) classifier. Proximal s...