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» A Formalization of Software Architecture
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BMCBI
2007
99views more  BMCBI 2007»
13 years 10 months ago
Statistical significance of cis-regulatory modules
Background: It is becoming increasingly important for researchers to be able to scan through large genomic regions for transcription factor binding sites or clusters of binding si...
Dustin E. Schones, Andrew D. Smith, Michael Q. Zha...
BMCBI
2008
115views more  BMCBI 2008»
13 years 10 months ago
BioGraphE: high-performance bionetwork analysis using the Biological Graph Environment
Background: Graphs and networks are common analysis representations for biological systems. Many traditional graph algorithms such as k-clique, k-coloring, and subgraph matching h...
George Chin Jr., Daniel G. Chavarría-Mirand...
BMCBI
2007
203views more  BMCBI 2007»
13 years 9 months ago
A Grid-based solution for management and analysis of microarrays in distributed experiments
Several systems have been presented in the last years in order to manage the complexity of large microarray experiments. Although good results have been achieved, most systems ten...
Ivan Porro, Livia Torterolo, Luca Corradi, Marco F...
BMCBI
2007
142views more  BMCBI 2007»
13 years 9 months ago
LinkHub: a Semantic Web system that facilitates cross-database queries and information retrieval in proteomics
nd: A key abstraction in representing proteomics knowledge is the notion of unique identifiers for individual entities (e.g. proteins) and the massive graph of relationships among...
Andrew K. Smith, Kei-Hoi Cheung, Kevin Y. Yip, Mar...
GRID
2006
Springer
13 years 9 months ago
Providing Portlet-Based Client Access to CIMA-Enabled Crystallographic Instruments, Sensors, and Data
The Common Instrument Middleware Architecture (CIMA) project, supported by the NSF Middleware Initiative, aims at making scientific instruments and sensors remotely accessible by ...
Hao Yin, Donald F. McMullen, Mehmet A. Nacar, Marl...
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