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» A Graph Theoretic Approach to Protein Structure Selection
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CIBCB
2007
IEEE
14 years 3 months ago
Modeling protein-DNA binding time in Stochastic Discrete Event Simulation of Biological Processes
Abstract— This paper presents a parametric model to estimate the DNA-protein binding time using the DNA and protein structures and details of the binding site. To understand the ...
Preetam Ghosh, Samik Ghosh, Kalyan Basu, Sajal K. ...
BMCBI
2010
147views more  BMCBI 2010»
13 years 8 months ago
Learning biological network using mutual information and conditional independence
Background: Biological networks offer us a new way to investigate the interactions among different components and address the biological system as a whole. In this paper, a revers...
Dong-Chul Kim, Xiaoyu Wang, Chin-Rang Yang, Jean G...
SDM
2008
SIAM
121views Data Mining» more  SDM 2008»
13 years 10 months ago
Integration of Multiple Networks for Robust Label Propagation
Transductive inference on graphs such as label propagation algorithms is receiving a lot of attention. In this paper, we address a label propagation problem on multiple networks a...
Tsuyoshi Kato, Hisashi Kashima, Masashi Sugiyama
DATE
1998
IEEE
82views Hardware» more  DATE 1998»
14 years 27 days ago
Exploiting Symbolic Techniques for Partial Scan Flip Flop Selection
Partial Scan techniques have been widely accepted as an effective solution to improve sequential ATPG performance while keeping acceptable area and performance overheads. Several ...
Fulvio Corno, Paolo Prinetto, Matteo Sonza Reorda,...
CSB
2004
IEEE
149views Bioinformatics» more  CSB 2004»
14 years 11 days ago
Weighting Features to Recognize 3D Patterns of Electron Density in X-Ray Protein Crystallography
Feature selection and weighting are central problems in pattern recognition and instance-based learning. In this work, we discuss the challenges of constructing and weighting feat...
Kreshna Gopal, Tod D. Romo, James C. Sacchettini, ...