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RECOMB
2009
Springer
14 years 8 months ago
Searching Protein 3-D Structures in Linear Time
Finding similar structures from 3-D structure databases of proteins is becoming more and more important issue in the post-genomic molecular biology. To compare 3-D structures of tw...
Tetsuo Shibuya
CPM
2006
Springer
125views Combinatorics» more  CPM 2006»
13 years 11 months ago
Geometric Suffix Tree: A New Index Structure for Protein 3-D Structures
Abstract. Protein structure analysis is one of the most important research issues in the post-genomic era, and faster and more accurate query data structures for such 3-D structure...
Tetsuo Shibuya
JCC
2011
154views more  JCC 2011»
12 years 10 months ago
Can we trust docking results? Evaluation of seven commonly used programs on PDBbind database
: Docking is one of the most commonly used techniques in drug design. It is used for both identifying correct poses of a ligand in the binding site of a protein as well as for the ...
Dariusz Plewczynski, Michal Lazniewski, Rafal Augu...
STOC
2009
ACM
133views Algorithms» more  STOC 2009»
14 years 8 months ago
Near-perfect load balancing by randomized rounding
We consider and analyze a new algorithm for balancing indivisible loads on a distributed network with n processors. The aim is minimizing the discrepancy between the maximum and m...
Tobias Friedrich, Thomas Sauerwald
IJCAI
2007
13 years 9 months ago
Kernel Conjugate Gradient for Fast Kernel Machines
We propose a novel variant of the conjugate gradient algorithm, Kernel Conjugate Gradient (KCG), designed to speed up learning for kernel machines with differentiable loss functio...
Nathan D. Ratliff, J. Andrew Bagnell