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» A Language for Biochemical Systems
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CMSB
2008
Springer
13 years 10 months ago
Compositional Definitions of Minimal Flows in Petri Nets
Abstract. This paper gives algebraic definitions for obtaining the minimal transition and place flows of a modular Petri net from the minimal transition and place flows of its comp...
Michael Pedersen
ENTCS
2010
119views more  ENTCS 2010»
13 years 8 months ago
Bio-PEPA for Epidemiological Models
Many models have been defined in order to describe the evolution of a disease in a population. The modelling of diseases is helpful to understand the mechanisms for their spread a...
Federica Ciocchetta, Jane Hillston
MBEC
2010
13 years 3 months ago
Cell sheet integrity and nanomechanical breakdown during programmed cell death
Apoptosis is a critical physiological pathway required for the normal functioning, homeostasis, and development of many organisms. This process is highly regulated at the biochemic...
Jiashan Wang, Andrew E. Pelling
BMCBI
2006
141views more  BMCBI 2006»
13 years 8 months ago
Visual setup of logical models of signaling and regulatory networks with ProMoT
Background: The analysis of biochemical networks using a logical (Boolean) description is an important approach in Systems Biology. Recently, new methods have been proposed to ana...
Julio Saez-Rodriguez, Sebastian Mirschel, Rebecca ...
BMCBI
2006
202views more  BMCBI 2006»
13 years 8 months ago
DWARF - a data warehouse system for analyzing protein families
Background: The emerging field of integrative bioinformatics provides the tools to organize and systematically analyze vast amounts of highly diverse biological data and thus allo...
Markus Fischer, Quan K. Thai, Melanie Grieb, J&uum...