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» A Language for Biochemical Systems
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CODES
2005
IEEE
14 years 2 months ago
System-level design automation tools for digital microfluidic biochips
Biochips based on digital microfluidics offer a powerful platform for massively parallel biochemical analysis such as clinical diagnosis and DNA sequencing. Current full-custom de...
Krishnendu Chakrabarty, Fei Su
SAC
2010
ACM
14 years 2 months ago
Chemical-inspired self-composition of competing services
This paper aims at pushing the clear relationship between software service composition and chemical dynamics a step forward. We developed a coordination model where services and c...
Mirko Viroli, Matteo Casadei
BMCBI
2010
126views more  BMCBI 2010»
13 years 8 months ago
Simulation of a Petri net-based Model of the Terpenoid Biosynthesis Pathway
Background: The development and simulation of dynamic models of terpenoid biosynthesis has yielded a systems perspective that provides new insights into how the structure of this ...
Aliah Hazmah Hawari, Zeti-Azura Mohamed-Hussein
BMCBI
2010
123views more  BMCBI 2010»
13 years 8 months ago
Computationally efficient flux variability analysis
Background: Flux variability analysis is often used to determine robustness of metabolic models in various simulation conditions. However, its use has been somehow limited by the ...
Steinn Gudmundsson, Ines Thiele
CORR
2010
Springer
105views Education» more  CORR 2010»
13 years 8 months ago
Molecular Recognition as an Information Channel: The Role of Conformational Changes
Molecular recognition, which is essential in processing information in biological systems, takes place in a crowded noisy biochemical environment and requires the recognition of a ...
Yonatan Savir, Tsvi Tlusty