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» A Massively Parallel Architecture for Bioinformatics
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EUMAS
2006
13 years 8 months ago
A Customizable Multi-Agent System for Distributed Data Mining
We present a general Multi-Agent System framework for distributed data mining based on a Peer-toPeer model. The framework adopts message-based asynchronous communication and a dyn...
Giancarlo Fortino, Giuseppe Di Fatta
BIBE
2008
IEEE
142views Bioinformatics» more  BIBE 2008»
14 years 1 months ago
Optimizing performance, cost, and sensitivity in pairwise sequence search on a cluster of PlayStations
— The Smith-Waterman algorithm is a dynamic programming method for determining optimal local alignments between nucleotide or protein sequences. However, it suffers from quadrati...
Ashwin M. Aji, Wu-chun Feng
BMCBI
2007
142views more  BMCBI 2007»
13 years 7 months ago
LinkHub: a Semantic Web system that facilitates cross-database queries and information retrieval in proteomics
nd: A key abstraction in representing proteomics knowledge is the notion of unique identifiers for individual entities (e.g. proteins) and the massive graph of relationships among...
Andrew K. Smith, Kei-Hoi Cheung, Kevin Y. Yip, Mar...
MICCAI
2009
Springer
14 years 8 months ago
Think Global, Act Local; Projectome Estimation with BlueMatter
Estimating the complete set of white matter fascicles (the projectome) from diffusion data requires evaluating an enormous number of potential pathways; consequently, most algorith...
Anthony Sherbondy, Robert Dougherty, Rajagopal A...
DATE
2009
IEEE
122views Hardware» more  DATE 2009»
14 years 2 months ago
Model-based synthesis and optimization of static multi-rate image processing algorithms
Abstract—High computational effort in modern image processing applications like medical imaging or high-resolution video processing often demands for massively parallel special p...
Joachim Keinert, Hritam Dutta, Frank Hannig, Chris...